Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30555
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    30   1.9  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    30   1.9  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.          28   5.7  
AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical ...    28   5.7  

>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 282 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 455
           QY+ A+  +D+  G    Q + RD D  + +YS +D +G  T++   ++ D H G   + 
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810

Query: 456 HKEPLAHVAK 485
           H    A +A+
Sbjct: 811 HGVSAADLAE 820


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 282 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 455
           QY+ A+  +D+  G    Q + RD D  + +YS +D +G  T++   ++ D H G   + 
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810

Query: 456 HKEPLAHVAK 485
           H    A +A+
Sbjct: 811 HGVSAADLAE 820


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
           protein W02B9.1b protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 282 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 455
           QY+ A+  +D+  G    Q + RD D  + +YS +D +G  T++   ++ D H G   + 
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810

Query: 456 HKEPLAHVAK 485
           H    A +A+
Sbjct: 811 HGVSAADLAE 820


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
           protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 282 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 455
           QY+ A+  +D+  G    Q + RD D  + +YS +D +G  T++   ++ D H G   + 
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810

Query: 456 HKEPLAHVAK 485
           H    A +A+
Sbjct: 811 HGVSAADLAE 820


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 591 RVGHGSGMHNRSGVHNGRGVHKGTAA*VEGR 499
           R GHG   H+R G H G G H   +    GR
Sbjct: 271 RHGHGGSGHHRGGRHGGHGRHGSCSGSPRGR 301



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 591 RVGHGSGMHNRSGVHNGRGVHKGTAA*VEGR 499
           R GHG   H+R G H G G H   +    GR
Sbjct: 320 RHGHGGSGHHRGGRHGGHGRHGSRSGSPGGR 350


>Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 261 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 434
           E Y    QY+F Y  +++ S+  + +  +E     V    ++ +DP    R +D      
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214

Query: 435 NGFNAVVHKEPLAHVAKVAKIAAPL 509
           N    V  ++P+A  A    + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239


>U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 261 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 434
           E Y    QY+F Y  +++ S+  + +  +E     V    ++ +DP    R +D      
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214

Query: 435 NGFNAVVHKEPLAHVAKVAKIAAPL 509
           N    V  ++P+A  A    + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239


>AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 261 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 434
           E Y    QY+F Y  +++ S+  + +  +E     V    ++ +DP    R +D      
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214

Query: 435 NGFNAVVHKEPLAHVAKVAKIAAPL 509
           N    V  ++P+A  A    + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,272,014
Number of Sequences: 27780
Number of extensions: 193127
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)