Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30555
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    27   0.13 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   0.70 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.93 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 360 VVQGSYSVVDPDGTKRTVDYTADPHNGF 443
           V QGS S   PDG + ++ Y AD  NGF
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVAD-ENGF 96


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 234 CRCRPGRKVEEYDAHPQ 284
           C CRP   VEEY   PQ
Sbjct: 113 CMCRPCTSVEEYAIIPQ 129


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 357 DVVQGSYSVVDPDGTKRTVDYTADPHNGFNAVVHKEPLAHVAKVAKIAAPLP 512
           ++   + S +DP  +  ++   A  H+G    V   P A V   AK+   +P
Sbjct: 658 NLASANISQLDPYSSLLSITNLAAEHSGDYTCVAANPAAEVRYTAKLQVKVP 709


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 184 EQPEQHVPREQLHMRLEQDVRCMPQEQSLLEQSQMRRP 71
           +Q  QHV   Q   + +Q  +   Q+Q   +Q Q   P
Sbjct: 428 QQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQHWP 465


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 414 DYTADPHNGFNAVVHKEPLAHVAKVAKIAA 503
           DY   P   F+++   +P    AKV++IAA
Sbjct: 59  DYVTLPPEFFDSLWQPDPYFLNAKVSEIAA 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,423
Number of Sequences: 438
Number of extensions: 2102
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)