Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30555
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40950.1 68415.m05056 bZIP transcription factor family protei...    31   0.99 
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    29   2.3  
At5g25580.1 68418.m03044 expressed protein                             29   3.0  
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    29   3.0  
At2g17590.1 68415.m02035 DC1 domain-containing protein contains ...    28   7.0  

>At2g40950.1 68415.m05056 bZIP transcription factor family protein
           similar to AtbZIP transcription factor GI:17065880 from
           [Arabidopsis thaliana]; contains Pfam profile: bZIP
           transcription factor PF00170
          Length = 721

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 606 MVDWSRVGHGSGMHNRSGVHNGRGVHKG 523
           ++D SR G G+G+ N +G+H GR   +G
Sbjct: 419 VLDTSRSGAGTGVSNSNGMHRGRDSDRG 446


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +3

Query: 300 DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHNGF 443
           DV D  + D        D DVV     VV  D +    D T+D HNG+
Sbjct: 651 DVSDDPSNDVSDDTSDDDSDVVS---DVVSDDASNDDSDDTSDDHNGY 695


>At5g25580.1 68418.m03044 expressed protein 
          Length = 405

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +3

Query: 243 RPGRKVEEYDAHPQYSFAYDVQDSLTGDSKTQHETRDGDVVQG--SYSVVDPDGTKRTVD 416
           RP R       H   ++ +D  D +  D+  + E  DGD V+G    S       K T  
Sbjct: 303 RPLRTTRSCRNHMPATYTFDEYDKMISDAVEETEDTDGDEVEGRDQQSASLDSNDKSTEV 362

Query: 417 YTADPHN 437
             A+ HN
Sbjct: 363 EAAEIHN 369


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 282 EDERRIPRLCDRGDSGNFGEWGGVRYGTSVYE 187
           EDER      D GD G+ G+WG +R   S  E
Sbjct: 320 EDEREAVLSDDDGDEGDRGDWGYLRPSNSFNE 351


>At2g17590.1 68415.m02035 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 632

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 228 QSCRCRPGRKVEEYDAHPQYSFAYDVQDSLTG 323
           Q C  RP +    Y  HPQ+   + VQD  TG
Sbjct: 82  QYCYLRPRKMTHPY--HPQHPLIFSVQDRQTG 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,646,229
Number of Sequences: 28952
Number of extensions: 180545
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)