Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30554
         (378 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6AQH2 Cluster: Transcriptional regulator, LysR family;...    31   9.4  
UniRef50_Q0UKT5 Cluster: Predicted protein; n=1; Phaeosphaeria n...    31   9.4  

>UniRef50_A6AQH2 Cluster: Transcriptional regulator, LysR family;
           n=1; Vibrio harveyi HY01|Rep: Transcriptional regulator,
           LysR family - Vibrio harveyi HY01
          Length = 307

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 69  LEQVFESVIYVGCFLNYSPIAFRVGLHPSAAILVAAGAWLLP 194
           L +VF+  ++V      SP AF + ++P+ A  V + A++LP
Sbjct: 42  LREVFKDALFVRESHGVSPTAFAIDIYPTLASAVESIAYMLP 83


>UniRef50_Q0UKT5 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 473

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 108 FLNYSPI-AFRVGLHPSAAILVAAGAWLLPATKWVCRTVSCTYLFSFK 248
           +L   PI  FR+  +    ++VA GAW + +  ++C  +   ++  FK
Sbjct: 114 YLRIFPIHRFRISCYCLLGLVVALGAWAVASNIFICNAIDSAWIDRFK 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,299,020
Number of Sequences: 1657284
Number of extensions: 6541472
Number of successful extensions: 16147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16147
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)