Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30554
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1031 - 23389263-23389541                                         27   6.5  
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887...    27   6.5  
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    26   8.6  
02_05_0486 - 29423756-29423965,29425424-29425528                       26   8.6  
01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732...    26   8.6  

>07_03_1031 - 23389263-23389541
          Length = 92

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 218 RSTNPFCSWQQPRPSGDQDGG 156
           R+  P+CSWQ    S D  GG
Sbjct: 3   RTCLPWCSWQLAAASADNSGG 23


>03_02_0652 -
           10188076-10188243,10188353-10188541,10188633-10188750,
           10188841-10189491,10189870-10190033,10190137-10190574
          Length = 575

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 131 VSRGSASVGRHLGRRWGVVAAS 196
           VS G AS+GRHL RR   V  S
Sbjct: 9   VSAGEASLGRHLARRLVQVGVS 30


>04_04_1445 -
           33658355-33658417,33658536-33658669,33659056-33659116,
           33659197-33659356,33660032-33660081,33662237-33662290,
           33662630-33662704,33662821-33662949,33663065-33663152,
           33663266-33663372,33663513-33663561,33663657-33663760,
           33663941-33663980,33664409-33664659,33664674-33664686,
           33665846-33666355,33666437-33667657,33667973-33668221,
           33668305-33668531
          Length = 1194

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 135 RVGLHPSAAILVAAGAWLLPATKWVCRTVSCTYL 236
           R  LHP  A LVA    LL +  W C + S   L
Sbjct: 55  RPSLHPLPASLVAILPLLLTSRNWQCSSASVAAL 88


>02_05_0486 - 29423756-29423965,29425424-29425528
          Length = 104

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 133 FAWVCIRRP-PSWSPLGR 183
           FAW+C+R P P  SPL R
Sbjct: 83  FAWLCLRLPLPGCSPLER 100


>01_01_0926 +
           7324145-7324561,7324773-7324778,7325255-7325311,
           7325572-7325661,7325938-7325982,7326088-7326142,
           7326245-7326288,7326401-7326790,7327276-7327541,
           7328292-7328430,7328514-7328564,7329158-7329642,
           7329724-7330327,7330717-7331025
          Length = 985

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 147 ADPRETQWDCNLKNILHISQIQIL 76
           A PR+T    NLK++LH S +++L
Sbjct: 801 ASPRDTTALTNLKDVLHESGLEVL 824


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,969,116
Number of Sequences: 37544
Number of extensions: 172890
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)