Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30554
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16411| Best HMM Match : DUF791 (HMM E-Value=0)                      29   0.95 
SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_16411| Best HMM Match : DUF791 (HMM E-Value=0)
          Length = 445

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 42  NTKVNLLGNLEQVFESVIYVGCFLNYSPIAFRVGLHPSAAILVA 173
           N ++ L+G +  +FES +Y+  FL ++P+  R   +P   I+ A
Sbjct: 244 NRRIMLIGIINSLFESAMYIFVFL-WTPVLDRHQQYPPLGIVFA 286


>SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 328 FYSI*IELKFQFNHYAIIDKLKQNFNYLKLNK 233
           F  + +E  F  NHY +  + KQ  +YLKL++
Sbjct: 142 FQLLCLETSFDKNHYVVGTERKQLASYLKLSE 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,606,218
Number of Sequences: 59808
Number of extensions: 210443
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)