Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30554
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z95559-6|CAB63363.1|  187|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    27   5.9  
AF067940-6|AAC19205.1|  223|Caenorhabditis elegans Hypothetical ...    27   5.9  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     27   5.9  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     27   5.9  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    26   7.8  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine re...    26   7.8  

>Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical
           protein K02B7.1 protein.
          Length = 742

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 160 PSWSPLGRGCCQLQNGFVERYHVPIYL 240
           P +SP G G C  QN ++   H+  +L
Sbjct: 429 PHYSPKGNGICSRQNRWIFHQHLRFHL 455


>Z95559-6|CAB63363.1|  187|Caenorhabditis elegans Hypothetical
           protein Y41E3.13 protein.
          Length = 187

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = -3

Query: 202 FVAGSNHAPAATKMAADGCRPTRNAMGL*FKKHPTYITDSNTCSKL 65
           F   S H       AADG  P     G+  K    Y+    TCS L
Sbjct: 116 FFVSSAHTDGQAYHAADGLSPWTTKSGVGEKTKRMYMRTERTCSTL 161


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 112 KKHPTYITDSNTCSKLPNKFTLVL 41
           KK   +  DS+TCS+ P+K+ ++L
Sbjct: 74  KKKKKFDDDSDTCSRWPSKWNILL 97


>AF067940-6|AAC19205.1|  223|Caenorhabditis elegans Hypothetical
           protein F36F12.6 protein.
          Length = 223

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 200 CSWQQPRPSGDQ 165
           C+WQ PRPS D+
Sbjct: 199 CTWQDPRPSSDK 210


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 112 KKHPTYITDSNTCSKLPNKFTLVL 41
           KK   +  DS+TCS+ P+K+ ++L
Sbjct: 16  KKKKKFDDDSDTCSRWPSKWNILL 39


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 112 KKHPTYITDSNTCSKLPNKFTLVL 41
           KK   +  DS+TCS+ P+K+ ++L
Sbjct: 198 KKKKKFDDDSDTCSRWPSKWNILL 221


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 295 FNHYAIIDKLKQNFNYLKLNK*VHD 221
           F H+ +++K+K+ + +L  N+ VHD
Sbjct: 439 FKHF-LVEKIKEGYQFLGTNQVVHD 462


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 295 FNHYAIIDKLKQNFNYLKLNK*VHD 221
           F H+ +++K+K+ + +L  N+ VHD
Sbjct: 439 FKHF-LVEKIKEGYQFLGTNQVVHD 462


>AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein34 protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 343 NICYNFYSI*IELKFQFNHYAIIDKLKQNFNYLK 242
           N     ++  I + F F HY ++ K  ++F +LK
Sbjct: 16  NTIKRVFAFSIAIIFPFTHYCVLTKSPKSFGFLK 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,154,288
Number of Sequences: 27780
Number of extensions: 158757
Number of successful extensions: 326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)