Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30554
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   4.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   8.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 84  ESVIYVGCFLNYSPIAFRVGLHPSAAILVAAG 179
           E++ YV    N SP+  RVG+H  A +    G
Sbjct: 350 EAIKYVQQTTN-SPVDMRVGIHTGAVLAGVLG 380


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 229  VHDTVLQTHFVAGSNHA 179
            V+   ++TH VAGSN A
Sbjct: 1567 VYQLKVETHNVAGSNQA 1583


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 229  VHDTVLQTHFVAGSNHA 179
            V+   ++TH VAGSN A
Sbjct: 1563 VYQLKVETHNVAGSNQA 1579


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 92  DICRMFFKLQSHCVSRGSASVGRHL-GRRWGVVAASYKMGL 211
           D CR  F+  +  ++ G + +  +L  + W  V  SYK GL
Sbjct: 410 DGCRTPFQWDNS-INAGFSKIAENLLEKNWLPVHTSYKSGL 449


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 313 FILNKNCNICSNMIIKN 363
           F  NKNCN  S  + KN
Sbjct: 89  FSENKNCNAGSLTVKKN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,164
Number of Sequences: 438
Number of extensions: 2169
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)