Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30554
         (378 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05960.1 68416.m00680 sugar transporter, putative similar to ...    27   5.5  

>At3g05960.1 68416.m00680 sugar transporter, putative similar to
           hexose transporter GI:5734440 GB:CAB52689 [Lycopersicon
           esculentum], Sugar carrier protein C [Ricinus communis]
           SP|Q41144, monosaccharide transporter [Nicotiana
           tabacum] GI:19885; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 507

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 57  LLGNLEQVFESVIYVGCFLNYSPIAFR-VGLHPSAAILVA 173
           ++G L Q+F+    +   + Y+P+ F+ VG    AA+L A
Sbjct: 281 IIGMLLQLFQQFTGINAIMFYAPVLFQTVGFGSDAALLSA 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,470,627
Number of Sequences: 28952
Number of extensions: 140841
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)