Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30553
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 139 4e-34
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 138 1e-33
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 137 1e-33
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 27 2.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.7
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.7
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 26 4.9
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.9
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.5
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 26 6.5
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ... 26 6.5
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 6.5
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 6.5
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 8.6
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 8.6
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 25 8.6
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.6
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 139 bits (336), Expect = 4e-34
Identities = 64/85 (75%), Positives = 71/85 (83%)
Frame = +1
Query: 1 LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 180
LKYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+
Sbjct: 52 LKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTV 111
Query: 181 HRITPEEAKYKLCKVKRVATGPKNV 255
HRIT EEAKYKLCKVKRV G K V
Sbjct: 112 HRITAEEAKYKLCKVKRVQLGAKGV 136
Score = 130 bits (313), Expect = 3e-31
Identities = 60/111 (54%), Positives = 76/111 (68%)
Frame = +3
Query: 255 PYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 434
P+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV
Sbjct: 137 PFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIV 196
Query: 435 SRERHPGSFDIVHIKDSTGHTFXXXXXXXXXXXXXXXXYISLPRGQRASAS 587
RE H GSF+I+H+KD+ F +ISLP+G+ S
Sbjct: 197 HREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLS 247
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 509 LNNVFIIGKGTKGVHLAAARAKGIRLTIAEERDQ 610
L+NVF+IG+ K ++ + KG++L+I EERD+
Sbjct: 222 LSNVFVIGETGKS-WISLPKGKGVKLSITEERDR 254
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 138 bits (333), Expect = 1e-33
Identities = 63/85 (74%), Positives = 71/85 (83%)
Frame = +1
Query: 1 LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 180
LKYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+
Sbjct: 52 LKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTV 111
Query: 181 HRITPEEAKYKLCKVKRVATGPKNV 255
HRIT EEAKYKLCKVKRV G K V
Sbjct: 112 HRITAEEAKYKLCKVKRVQLGAKGV 136
Score = 130 bits (313), Expect = 3e-31
Identities = 60/111 (54%), Positives = 76/111 (68%)
Frame = +3
Query: 255 PYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 434
P+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV
Sbjct: 137 PFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIV 196
Query: 435 SRERHPGSFDIVHIKDSTGHTFXXXXXXXXXXXXXXXXYISLPRGQRASAS 587
RE H GSF+I+H+KD+ F +ISLP+G+ S
Sbjct: 197 HREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLS 247
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 509 LNNVFIIGKGTKGVHLAAARAKGIRLTIAEERDQ 610
L+NVF+IG+ K ++ + KG++L+I EERD+
Sbjct: 222 LSNVFVIGETGKS-WISLPKGKGVKLSITEERDR 254
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 137 bits (332), Expect = 1e-33
Identities = 63/85 (74%), Positives = 71/85 (83%)
Frame = +1
Query: 1 LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 180
LKYAL G EV I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+
Sbjct: 52 LKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTV 111
Query: 181 HRITPEEAKYKLCKVKRVATGPKNV 255
HRIT EEAKYKLCKVKRV G K V
Sbjct: 112 HRITAEEAKYKLCKVKRVQLGAKGV 136
Score = 130 bits (313), Expect = 3e-31
Identities = 60/111 (54%), Positives = 76/111 (68%)
Frame = +3
Query: 255 PYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 434
P+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV
Sbjct: 137 PFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIV 196
Query: 435 SRERHPGSFDIVHIKDSTGHTFXXXXXXXXXXXXXXXXYISLPRGQRASAS 587
RE H GSF+I+H+KD+ F +ISLP+G+ S
Sbjct: 197 HREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLS 247
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 509 LNNVFIIGKGTKGVHLAAARAKGIRLTIAEERDQ 610
L+NVF+IG+ K ++ + KG++L+I EERD+
Sbjct: 222 LSNVFVIGEAGKS-WISLPKGKGVKLSITEERDR 254
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 600 SSAMVRRMPFARAAARCTPFVPLPIMNTLFNSWRRCVPWSP*CAQ 466
S A + +PF+R RC +P + + N R PW CA+
Sbjct: 94 SWARIEEIPFSRIGGRCERLLPYLVASNPVNYGR---PWRLNCAE 135
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 308 QSQRFHPVRHCNYED 352
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 366 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 470
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 4.9
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -3
Query: 577 ALCPRGSEMYALRALADYEHVVQLVAKVCPVESLMC--TMSKEPGCLSRDTMVPTRPKLR 404
AL PR E + + +D EH+ K +SL+ + K+ + + L
Sbjct: 33 ALKPRNIENFNNQERSDLEHIHSKPKK----DSLLSWNILLKKGSYKENELLAKRNQNLV 88
Query: 403 PPVIIHKFPDSNLMKSIIFVVAMSNWMESLTL 308
P VII P N KS++ + N S+ L
Sbjct: 89 PTVIIPASPRDNASKSVVSKKEVVNLSSSVAL 120
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 511 QLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 362
Q V + P ES M + K+ L T P RP L+P + + P S L+
Sbjct: 412 QSVRERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 690 PDWAPCWGGPPYP 728
P+WA W PPYP
Sbjct: 253 PEWASSWYLPPYP 265
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 479 LDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLD 363
LD+H V S+ D A T + AS DH VPG K +
Sbjct: 174 LDLHQVAQVAQSVI--DNAAT--IAASLDHCAVPGRKFE 208
>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +3
Query: 615 IRSPKSPASIKGKRQWNFLKNWRFSPDWAPCWG 713
+ SP ++ +W +W F+P CWG
Sbjct: 52 VNSPGLVLTLIPYEEWKQFSDWSFTPFDEGCWG 84
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 554 DVRPSCPCRL*TRCSTRGEGVS 489
DV P C C L +C + G+G S
Sbjct: 806 DVYPQCWCNLLEKCISTGDGCS 827
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 690 PDWAPCWGGPPYP 728
P+WA W PPYP
Sbjct: 253 PEWASSWYLPPYP 265
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 329 LDGIVDFDKWVWIADGAAIMRYQVRT 252
LDG+ D +KW+ D + + R +V T
Sbjct: 410 LDGLKDPEKWLQNTDPSTVSRVEVST 435
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 538 HEGRTSRCRAGKGHPPHHRRGTGSS 612
+E RTS+ +AGK H HH++ G +
Sbjct: 491 NEDRTSK-KAGKKHHRHHKKKKGGN 514
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 505 RVEQRVHNRQGHEGRTSRCRAGKGHPPHHRRGTG 606
+ +QR + GR R R GH +RRG G
Sbjct: 83 QAQQRENRGSRFRGRGQRGRGNYGHTAPNRRGRG 116
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 204 SLLRGDTVDCESALNIID*TKQ 139
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,105
Number of Sequences: 5004
Number of extensions: 71885
Number of successful extensions: 223
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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