Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30553
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   5e-34
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              32   0.56 
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              32   0.56 
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      31   1.3  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_21278| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_41399| Best HMM Match : TP2 (HMM E-Value=3.2)                       30   2.3  
SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)                   29   3.0  
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)              29   4.0  
SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_23439| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00066)           29   4.0  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  28   6.9  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         28   9.1  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  141 bits (342), Expect = 5e-34
 Identities = 59/106 (55%), Positives = 78/106 (73%)
 Frame = +3

Query: 255 PYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 434
           PY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN+GRVG + 
Sbjct: 561 PYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVT 620

Query: 435 SRERHPGSFDIVHIKDSTGHTFXXXXXXXXXXXXXXXXYISLPRGQ 572
            RE+H GSFDIVH+KD+TGH F                Y+SLP+G+
Sbjct: 621 HREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGK 666



 Score =  137 bits (331), Expect = 1e-32
 Identities = 65/85 (76%), Positives = 72/85 (84%)
 Frame = +1

Query: 1   LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 180
           LKYAL G EV KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +
Sbjct: 476 LKYALNGEEVKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAV 535

Query: 181 HRITPEEAKYKLCKVKRVATGPKNV 255
           HRIT EEAKYKL +V+RV  G K V
Sbjct: 536 HRITAEEAKYKLGRVRRVDVGAKGV 560



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +2

Query: 488 GTHLRHELNNVFIIGKGTKGVHLAAARAKGIRLTIAEERDQAHSE 622
           G      L N+F+IGKG K  +++  + KG+RL+IAEERD+  +E
Sbjct: 639 GHQFATRLTNIFVIGKGNKP-YVSLPKGKGVRLSIAEERDRRIAE 682


>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 858

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 529 RQGHEGRTSRCRAGKG-HPPHHRRGTGSSAFGAQSPPLQLRVNGNGT 666
           R  ++ + SR +A  G HP  HR G GS   G Q+  +  R N NGT
Sbjct: 124 RGRYKSQDSRLQASAGGHPESHREGIGSG--GGQNACVLHRQNSNGT 168


>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 911

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 529 RQGHEGRTSRCRAGKG-HPPHHRRGTGSSAFGAQSPPLQLRVNGNGT 666
           R  ++ + SR +A  G HP  HR G GS   G Q+  +  R N NGT
Sbjct: 164 RGRYKSQDSRLQASAGGHPESHREGIGSG--GGQNACVLHRQNSNGT 208


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
 Frame = +1

Query: 451 PAPSTLCTSRTPRDTPSPRVEQRVHNRQGHEGRTSRCRAGKGH----PPHHRRGTGSSAF 618
           P   +    R   D  +PR  +RV  R+G     +R RA  G     PP     +    +
Sbjct: 342 PTSPSFTPGRVHSDPETPRRAERVRARRGPGSAIARLRAPLGRVARTPPRRAAASPLVGY 401

Query: 619 GAQSPPLQLRVNGNGTF 669
            A++PP    +  + T+
Sbjct: 402 AARTPPRTPSIRTHSTY 418


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
 Frame = -3

Query: 589 GEADAL---CPRGSEMYALRALADYEHVVQLVAKVCP--VESLMCTMSKEPG-CLSRDTM 428
           G A++L   CPRG     ++   DY H+V       P    +   T S   G   S  T 
Sbjct: 590 GSAESLLSRCPRGLLWSVVKKTCDYPHLVDCSRPTTPPVTTTKSTTSSTTKGTTASTTTS 649

Query: 427 VP-TRPKLRPPVIIH 386
            P T P  RPP  +H
Sbjct: 650 TPTTTPTTRPPCNLH 664


>SB_21278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 561 PRGQRASASPSPRNGIKRIRSPKS-PASIKGKRQWNFLK-NWRFSPDWAPCWGGPP 722
           P  Q  S+   P N      S K  P  +K KR +N  K + +F  DW    GGPP
Sbjct: 163 PPFQSLSSGQFPNNENNHTDSTKDYPPKLKPKRVFNVPKTSVQFQSDWKVLKGGPP 218


>SB_41399| Best HMM Match : TP2 (HMM E-Value=3.2)
          Length = 365

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +1

Query: 457 PSTLCTSRTPRDTPSPRVEQRVHNRQGHEGRTSRCRAGKGHPP 585
           P   C  + PR TPS   + +    Q     T  C A   +PP
Sbjct: 123 PRERCDIKVPRKTPSTCTDSQTEQTQSSVLNTDHCYASTSNPP 165


>SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)
          Length = 443

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 416 ACGHH-RVPRETSRLLRHCAHQGLHGTHLRHELNNVFIIGKGTK 544
           ACG   R+P + S L R+CA  G +GT    E     ++  GTK
Sbjct: 245 ACGSFVRLPEDDSILTRNCAKWGSNGTLPEGEWGKNALLKDGTK 288


>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
          Length = 695

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 26/107 (24%), Positives = 42/107 (39%)
 Frame = +1

Query: 310 KSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPR 489
           K+ +P     Q  R+   +S        S +AV   +  P   A D P   ++   + P 
Sbjct: 384 KAPLPPPPPQQASRIDYRASYGAAPPAPSLQAVCIDLPEPPLKAGDSPLKRSV---KKPL 440

Query: 490 DTPSPRVEQRVHNRQGHEGRTSRCRAGKGHPPHHRRGTGSSAFGAQS 630
             P P+   R++ R  +       + G G P   +RG G   FGA +
Sbjct: 441 PPPPPQQAARINYRASYGAPPLPPKRGGGPPLPPKRGGGPPLFGAMA 487


>SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/78 (28%), Positives = 29/78 (37%)
 Frame = +1

Query: 427 PSCPARDIPAPSTLCTSRTPRDTPSPRVEQRVHNRQGHEGRTSRCRAGKGHPPHHRRGTG 606
           PS   R +  P  L   R PR+   P   QR      +   T R     G+P      +G
Sbjct: 360 PSETERTLRDPENLRKPREPREPREPSGIQRTLGSPENPSVTQRTLGKPGNPREPTEPSG 419

Query: 607 SSAFGAQSPPLQLRVNGN 660
           +    AQ P L  R  G+
Sbjct: 420 TQRNEAQEPLLSPRHAGS 437


>SB_23439| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00066)
          Length = 417

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 515 NVFIIGKGTKGVHLAAARAKGIRLTIAEERDQAH 616
           +V I+G G  G++LAA      +LT+ + RD  H
Sbjct: 50  HVVIVGGGYGGINLAAKLKNDCQLTLIDARDSFH 83


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +2

Query: 287 PLSRPTYQSQRFHPVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPR---ETSRL 457
           PLS  +  S R+HP+  C++  + LH      L + H    +     H  P    ++S L
Sbjct: 102 PLSSSSQSSHRYHPL--CHHHHHHLHH--HHHLCHHHLSLFVCLPTQHYFPAFQVQSSPL 157

Query: 458 LRHCAHQGLHG 490
           L HC H    G
Sbjct: 158 LCHCTHDDFSG 168


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +1

Query: 4   KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 171
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 448 IPAPSTLCTSRTPRDTPSPRVEQRVHNRQGHEGRTSRCRAG 570
           IP P    T   P  TP P+VE+  H  +G E      + G
Sbjct: 508 IPVPKVQTTVDMPGPTPVPKVEEVQHAGKGKEAELQPPKGG 548


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 436  PARDIPAPSTLCTSRTPRDTPSPRVEQRVHNRQGHEGRTSRCRAGKG 576
            P R   +P     +RTP  TPS R      +R G  G +S   + +G
Sbjct: 889  PQRAAASPLVGYAARTPPRTPSIRTHSTYSSRSGISGASSHSSSPRG 935


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +2

Query: 131  LMNCFV*SMMLRADSQSTVSPLRRLSTSCVKSSVWRPDLRMSVLG-NA*WPHHPLSRPTY 307
            L NCF+   + +    +  S L R+STS V  +    +  +S +G     P  PL+   +
Sbjct: 1987 LKNCFIIDCVSKEACAAIPSRLGRISTSLVYFNKTYDEAMVSAIGPKVKHPACPLAADIF 2046

Query: 308  QSQRFH-PVRHCNYEDYG 358
                F+  +R  N+ D+G
Sbjct: 2047 SQVTFNGGIRAGNFTDHG 2064


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 3   EVCFDRKRSPENCE 44
           E+C DRKR P++CE
Sbjct: 82  ELCHDRKRGPDDCE 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,879,433
Number of Sequences: 59808
Number of extensions: 611471
Number of successful extensions: 2116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2110
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)