Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30553
(741 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 122 4e-28
Z37140-3|CAA85500.1| 189|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.5
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.5
U41017-3|AAC48213.1| 548|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 8.0
U29244-12|AAC71093.3| 604|Caenorhabditis elegans Hypothetical p... 28 8.0
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 28 8.0
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 122 bits (293), Expect = 4e-28
Identities = 58/105 (55%), Positives = 69/105 (65%)
Frame = +3
Query: 255 PYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 434
P L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL +TGGRN+GRVG I
Sbjct: 136 PVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIG 195
Query: 435 SRERHPGSFDIVHIKDSTGHTFXXXXXXXXXXXXXXXXYISLPRG 569
RER PG+ DI+HIKDS GH+F +SLP G
Sbjct: 196 HRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTG 240
Score = 110 bits (264), Expect = 1e-24
Identities = 51/85 (60%), Positives = 63/85 (74%)
Frame = +1
Query: 1 LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 180
LKYAL E KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +
Sbjct: 51 LKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVV 110
Query: 181 HRITPEEAKYKLCKVKRVATGPKNV 255
HRI EA +KLCKVK V T K V
Sbjct: 111 HRIQAAEADFKLCKVKSVRTVNKGV 135
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 410 LGACGHH-RVPRETSRLLRHCAHQGLHGTHLRHELNNVFIIGKGTKGVHLAAARAKGIRL 586
+G GH R+P + + H H R ++NVF+IGKG K + ++ GIRL
Sbjct: 191 VGIIGHRERLPGASDII--HIKDSAGHSFATR--ISNVFVIGKGNKAL-VSLPTGAGIRL 245
Query: 587 TIAEERDQ 610
+IAEERD+
Sbjct: 246 SIAEERDK 253
>Z37140-3|CAA85500.1| 189|Caenorhabditis elegans Hypothetical
protein ZK899.3 protein.
Length = 189
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 445 DIPAPSTLCTSRTPRDTPSPRVEQRVHNRQGHEGRTSRCRAGK 573
D+P L TS + TP PR+ + N H+G + + K
Sbjct: 79 DVPLTVELLTSDSKSTTPRPRIAWAIPNAAHHKGSSKHQKQSK 121
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 383 LVYDHGRP*LGACGHHRVPRETSRLLRH 466
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 383 LVYDHGRP*LGACGHHRVPRETSRLLRH 466
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>U41017-3|AAC48213.1| 548|Caenorhabditis elegans Hypothetical
protein T26C11.4 protein.
Length = 548
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 511 EQRVHNRQGHEGRTSRCRAGKGHPPHHRRGTGSSAF-GAQS 630
E R + GH R S+ R G+ +HRR S + G Q+
Sbjct: 290 EDRSGSNHGHSNRDSKARRGQDSGFNHRRNVDSDGYNGGQN 330
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 424 APSCPARDIPAPSTLCTSRTPRDTPSPRV 510
AP CP PAP+ C P TPSP V
Sbjct: 107 APCCPPP--PAPAAPCCPPPPPPTPSPLV 133
>U29244-12|AAC71093.3| 604|Caenorhabditis elegans Hypothetical
protein ZK1248.13 protein.
Length = 604
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = +1
Query: 454 APSTLCTSRTPRDTPSPRVEQRVHN-------RQGHEGRTSRCRAGKGHPPHHRRGTGS 609
A S +C + TPRD P P V Q+ ++ ++ H+ RC+ + H R GT S
Sbjct: 41 ADSAVCLT-TPRD-PFPAVLQKFNSSRKNHQIKKFHDSNVKRCQEYRKSMEHQRNGTDS 97
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +1
Query: 442 RDI--PAPSTLCTSRTPRDTPSPRVEQRVHNRQGHEGRTSRCRAGKGHPPHHRRGTG 606
RD+ P S + R R P + ++ G+E R R G G PP G G
Sbjct: 322 RDVRDPRDSRMPDPRDSRALSDPYAAESRYSEYGYESREPYWRGGSGGPPSIGGGVG 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,236
Number of Sequences: 27780
Number of extensions: 434238
Number of successful extensions: 1397
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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