Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30552
         (777 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    26   1.5  
AF457551-1|AAL68781.1|  406|Anopheles gambiae calreticulin protein.    24   4.6  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 490 GSKKSRLAKSIGISNFNTTQIDRILENGQIKPSVLQV 600
           G    +L  S+G+   NT      L NG  +PSV+ V
Sbjct: 138 GEAVVQLVDSLGLEVLNTGTAPTFLGNGVARPSVVDV 174



 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 754 WPTSVGSFGAVLKGEAVVETSGQTGKNAIN 665
           W T+ GS     KGEAVV+     G   +N
Sbjct: 125 WHTAWGSCRTNAKGEAVVQLVDSLGLEVLN 154


>AF457551-1|AAL68781.1|  406|Anopheles gambiae calreticulin protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 687 WPDVSTTASPFNTAPNDPTLVGHLP 761
           W D +T A P +T P D     H+P
Sbjct: 216 WDDRATIADPDDTKPEDWDKPEHIP 240


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 838,524
Number of Sequences: 2352
Number of extensions: 16544
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)