Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30552
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.19 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        25   0.79 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   4.2  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   5.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   5.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 11/36 (30%), Positives = 25/36 (69%)
 Frame = +1

Query: 532 NFNTTQIDRILENGQIKPSVLQVEVNLHLGQDKLID 639
           N+    +D++LE+G++KP+  +V ++  + + K+ID
Sbjct: 244 NYVYRSVDQVLEDGKLKPN-KKVRISNEMSKVKVID 278


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 657 HSLLMAFFPVWPDVSTTASPFNTAPNDPTLVGH 755
           ++LL+ F    PD + T   FN   N PT + H
Sbjct: 23  NALLLGFVQSTPDNNKTVREFNVYWNVPTFMCH 55


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 242 IVFK*DQIGAAVR--ASGIPREDIFIVTKLPMDNQRDVVKQLEKSLARLNMSYVDLYLIH 415
           ++ +  QIG + +  AS +   ++ +  +   +N R +VKQ++   A    +   LYL +
Sbjct: 307 VLLRAKQIGFSDKQIASVVKSSELAVRIQRQENNIRPMVKQIDTVAAEWPATTNYLYLTY 366

Query: 416 NPVAFNPGFKG 448
           N    +  F G
Sbjct: 367 NGTVHDVEFPG 377


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 529 SNFNTTQIDRILENGQI 579
           + ++   IDRIL+NG+I
Sbjct: 23  TKYDDMDIDRILQNGRI 39


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 566 SNILSICVVLKLDMPIDL 513
           S++L +C+ LKL   ID+
Sbjct: 51  SDVLRVCIKLKLSQLIDV 68


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 566 SNILSICVVLKLDMPIDL 513
           S++L +C+ LKL   ID+
Sbjct: 51  SDVLRVCIKLKLSQLIDV 68


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 529 SNFNTTQIDRILENGQI 579
           + ++   IDRIL+NG+I
Sbjct: 23  TKYDDMDIDRILQNGRI 39


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 670 WRFSPFGP 693
           WRF P+GP
Sbjct: 553 WRFQPWGP 560


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,275
Number of Sequences: 438
Number of extensions: 5171
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)