Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30551
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    95   6e-21
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    95   6e-21
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    28   1.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   1.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   1.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    26   4.4  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   5.8  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 41/60 (68%), Positives = 52/60 (86%)
 Frame = +1

Query: 85  RKKRKYELGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRILML 264
           RKKRK+ELGR  +NTR+GP+R+H VR RGGN K+RALRLD+GNFSWGSE  ++KTRI+ +
Sbjct: 22  RKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQV 81



 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 43/91 (47%), Positives = 55/91 (60%)
 Frame = +3

Query: 255 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 434
           I V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T        
Sbjct: 79  IQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP----- 132

Query: 435 KKRSQKTARKYLARQRLAKVEGALESNSTRG 527
             +S+   RK+ AR   +KV+ ALE+    G
Sbjct: 133 NPKSKHVQRKHSARLGDSKVDSALETQFAAG 163



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +2

Query: 512 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 637
           QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 159 QFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 41/60 (68%), Positives = 52/60 (86%)
 Frame = +1

Query: 85  RKKRKYELGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRILML 264
           RKKRK+ELGR  +NTR+GP+R+H VR RGGN K+RALRLD+GNFSWGSE  ++KTRI+ +
Sbjct: 22  RKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQV 81



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 43/91 (47%), Positives = 55/91 (60%)
 Frame = +3

Query: 255 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 434
           I V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T        
Sbjct: 79  IQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP----- 132

Query: 435 KKRSQKTARKYLARQRLAKVEGALESNSTRG 527
             +S+   RK+ AR   +KV+ ALE+    G
Sbjct: 133 TPKSKHVQRKHSARLGDSKVDSALETQFAAG 163



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +2

Query: 512 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 637
           QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 159 QFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 52  KGPPVGNVRPIRKKRKYELGRPAANTRLGPQRMHSVRSRGGNTKYRALR 198
           KG          +KRK  L R A   RL  + M S+ S+GG    +A +
Sbjct: 36  KGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 316 FLTRVFVRTNSLLDALYTTSIYGFCELNIPI 224
           F+T+ F R+  L D+L   SIY F + +IP+
Sbjct: 629 FITK-FSRSKGLFDSLCYVSIYAFNDYSIPL 658


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 103  ELGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 255
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 216  LLGIGMFNSQNPYIDVVYNASNNE 287
            L+ I   N +NPY D++ N S N+
Sbjct: 2386 LIFISQHNGKNPYYDLIVNISENK 2409


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -2

Query: 614 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIAL*STLNLSKTLPCQVFSCCLLTSLL 435
           D   + CLLR  H+RD  +  +  RK  N   G  L     L + L C+     LL   +
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQL-----LEEMLHCEKQHIQLLLDSV 488

Query: 434 VD 429
           +D
Sbjct: 489 LD 490


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 358 YHCLNGVASTTTIAFLTRVFVRTNS 284
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,995
Number of Sequences: 5004
Number of extensions: 53270
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)