Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30551
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 88 5e-18
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 88 7e-18
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 33 0.16
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 33 0.21
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 32 0.49
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 28 6.0
11_01_0551 + 4361640-4363386,4363443-4363687 28 7.9
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 28 7.9
07_01_0556 - 4136000-4136608 28 7.9
04_01_0575 - 7454421-7455707 28 7.9
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 88.2 bits (209), Expect = 5e-18
Identities = 43/65 (66%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Frame = +1
Query: 67 GNVRPIRKKRKYELGRPAANTRLGPQR-MHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 243
G + RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 244 KTRIL 258
KTRIL
Sbjct: 76 KTRIL 80
Score = 82.6 bits (195), Expect = 3e-16
Identities = 34/45 (75%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
EQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 190 EQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
Score = 81.4 bits (192), Expect = 6e-16
Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Frame = +3
Query: 255 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT--EAEEAI 428
+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A +AE A+
Sbjct: 80 LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHAL 139
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 87.8 bits (208), Expect = 7e-18
Identities = 43/65 (66%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Frame = +1
Query: 67 GNVRPIRKKRKYELGRPAANTRLGPQR-MHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 243
G + RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTR 75
Query: 244 KTRIL 258
KTRIL
Sbjct: 76 KTRIL 80
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/99 (47%), Positives = 60/99 (60%), Gaps = 8/99 (8%)
Frame = +3
Query: 255 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLT 410
+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+
Sbjct: 80 LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQ 139
Query: 411 EAEEAIINKKRSQKTARKYLARQRLAKVEGALESNSTRG 527
E E A K+S RK RQ+ ++ +E G
Sbjct: 140 EGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSG 178
Score = 82.6 bits (195), Expect = 3e-16
Identities = 34/45 (75%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
EQF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 173 EQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 367 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSIYGFCELNIPIP 221
C Y L GV S IA L+ + R SL+ + +IYG L +P+P
Sbjct: 426 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVP 474
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 367 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSIYGFCELNIPIP 221
C Y L GV S IA L+ + R SL+ + +IYG L +P+P
Sbjct: 434 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLP 482
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 94 RKYELGRPAANTRLGPQRMHSVRSR----GGNTKYRALRLDTGN-FSWGS 228
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 515 FHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 104 FYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 390 KKGAKLTEAEEAIINKK-RSQKTARKYLARQRLAKVEGALESNSTRGVCWLAWRVAQVSV 566
+ G+ T+A E+I KK R++K +K + + A E G L WR+ S
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEEGGGGGAASLGWRLCNTSA 348
Query: 567 VAPMV 581
A +
Sbjct: 349 GADYI 353
>10_08_0663 -
19666476-19667017,19667664-19667755,19668039-19668095,
19668304-19668447,19668567-19668613,19668733-19668791,
19668975-19669045,19669274-19669341,19669431-19669598,
19669885-19669944,19670075-19670251
Length = 494
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -2
Query: 299 CTHQFIVRCIIHNINIRVLRVEHSDPQEKL--PVSRRSARYLVFPPRERTECIR*GPSLV 126
C H+F ++C ++ + RVE + P + P+ R P TE ++ +L
Sbjct: 316 CCHEFCIKCALYLCSTSNTRVEFTGPPGSIPCPLCRNGIMSFTKLPSTPTEGLKSSSALT 375
Query: 125 F 123
F
Sbjct: 376 F 376
>07_01_0556 - 4136000-4136608
Length = 202
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 106 LGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNF 216
LG A+T R HS + RGG+T R + DT +F
Sbjct: 166 LGLILASTATWLARRHSAKVRGGSTVIRPVSGDTDDF 202
>04_01_0575 - 7454421-7455707
Length = 428
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 99 LPLLAYGAHVSHRWALSLYASESRLITPSLVGV 1
LPLL Y AH++ + +S + SR P +VGV
Sbjct: 63 LPLLPYLAHLTGKHYMSFVSVRSRRHAPWIVGV 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,159,483
Number of Sequences: 37544
Number of extensions: 380700
Number of successful extensions: 1159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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