Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30551
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              120   8e-28
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           37   0.017
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           31   0.86 
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    31   0.86 
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           28   8.0  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  120 bits (290), Expect = 8e-28
 Identities = 58/91 (63%), Positives = 67/91 (73%)
 Frame = +3

Query: 255 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 434
           IDVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+N
Sbjct: 63  IDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILN 122

Query: 435 KKRSQKTARKYLARQRLAKVEGALESNSTRG 527
           KKRS    RK  AR+  AKV   +E     G
Sbjct: 123 KKRSNHCTRKLEARKANAKVAPGMEEQFVTG 153



 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 41/62 (66%), Positives = 52/62 (83%)
 Frame = +1

Query: 73  VRPIRKKRKYELGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTR 252
           ++P+R KRK+ELGRP ANT++G +R+H VR+RGGN K+RA RLDT NFSWGSE  TRK R
Sbjct: 2   MKPLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKAR 61

Query: 253 IL 258
           I+
Sbjct: 62  II 63



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = +2

Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
           EQF TGRL ACV+SRPGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 148 EQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 249 PYIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 368
           P + V+++ +N E +    +VK +IV VD  PF  W++ +
Sbjct: 74  PILSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
 Frame = -3

Query: 367  CDSYHCLNGVASTTTIAFLTRVFVRTNSLL--DALYTTSIYGFCELNIPIPKRSYRCPDA 194
            C  Y C   V +TT +A +  ++++  S +   A+     + +C  N             
Sbjct: 700  CPGYKCATPVDNTTILALVPELYLKYTSQVRQKAVEANPSWRWCPGNKCSLVNKVTKRSC 759

Query: 193  AHGT*YFHHVNERSAYAEDRAWCLQRDALTHTSSSCVWGARF 68
             HG  +  +     A A  + WC +    TH  + C    RF
Sbjct: 760  YHGNTFLDYGGVPVACACGKTWCSECQEETHWPAKCEIAQRF 801


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 393 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALESNSTRG 527
           + AKL + EE II K+ +  TA   +  ++  K++ ALE+    G
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSG 745


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 511 AIPHGAFAGLRGESPRSVW 567
           A PH A +G+R  SPR +W
Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,755,348
Number of Sequences: 59808
Number of extensions: 438987
Number of successful extensions: 1256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)