Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30551
(678 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 138 2e-32
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 138 2e-32
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 138 2e-32
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 138 2e-32
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 136 7e-32
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 86 9e-17
BC038797-1|AAH38797.1| 787|Homo sapiens protocadherin beta 15 p... 30 8.7
AF217742-1|AAK51610.1| 787|Homo sapiens protocadherin-beta15 pr... 30 8.7
AF152494-1|AAD43755.1| 787|Homo sapiens protocadherin beta 15 p... 30 8.7
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 138 bits (334), Expect = 2e-32
Identities = 81/171 (47%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Frame = +3
Query: 36 HWHKAKGPTGGKRAPHTQEEEV*VRASRCKHQARSSAYALRSFTWWKY*VPCAASGHR*L 215
+WHK + TGGKR P+ ++ R A ++ R + V +R L
Sbjct: 7 NWHKRR-KTGGKRKPYHKK-----RKYELGRPAANTKIGPRRIHTVR--VRGGNKKYRAL 58
Query: 216 LLGIGMFN-------SQNPYIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 374
L +G F+ + IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY
Sbjct: 59 RLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYA 118
Query: 375 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALESNSTRG 527
LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LE +G
Sbjct: 119 LPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 113 bits (273), Expect = 4e-25
Identities = 49/64 (76%), Positives = 56/64 (87%)
Frame = +1
Query: 67 GNVRPIRKKRKYELGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 246
G +P KKRKYELGRPAANT++GP+R+H+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 247 TRIL 258
TRI+
Sbjct: 76 TRII 79
Score = 86.2 bits (204), Expect = 9e-17
Identities = 36/45 (80%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
EQF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 164 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 138 bits (334), Expect = 2e-32
Identities = 81/171 (47%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Frame = +3
Query: 36 HWHKAKGPTGGKRAPHTQEEEV*VRASRCKHQARSSAYALRSFTWWKY*VPCAASGHR*L 215
+WHK + TGGKR P+ ++ R A ++ R + V +R L
Sbjct: 7 NWHKRR-KTGGKRKPYHKK-----RKYELGRPAANTKIGPRRIHTVR--VRGGNKKYRAL 58
Query: 216 LLGIGMFN-------SQNPYIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 374
L +G F+ + IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY
Sbjct: 59 RLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYA 118
Query: 375 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALESNSTRG 527
LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LE +G
Sbjct: 119 LPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 113 bits (273), Expect = 4e-25
Identities = 49/64 (76%), Positives = 56/64 (87%)
Frame = +1
Query: 67 GNVRPIRKKRKYELGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 246
G +P KKRKYELGRPAANT++GP+R+H+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 247 TRIL 258
TRI+
Sbjct: 76 TRII 79
Score = 86.2 bits (204), Expect = 9e-17
Identities = 36/45 (80%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
EQF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 164 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 138 bits (334), Expect = 2e-32
Identities = 81/171 (47%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Frame = +3
Query: 36 HWHKAKGPTGGKRAPHTQEEEV*VRASRCKHQARSSAYALRSFTWWKY*VPCAASGHR*L 215
+WHK + TGGKR P+ ++ R A ++ R + V +R L
Sbjct: 7 NWHKRR-KTGGKRKPYHKK-----RKYELGRPAANTKIGPRRIHTVR--VRGGNKKYRAL 58
Query: 216 LLGIGMFN-------SQNPYIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 374
L +G F+ + IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY
Sbjct: 59 RLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYA 118
Query: 375 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALESNSTRG 527
LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LE +G
Sbjct: 119 LPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 113 bits (273), Expect = 4e-25
Identities = 49/64 (76%), Positives = 56/64 (87%)
Frame = +1
Query: 67 GNVRPIRKKRKYELGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 246
G +P KKRKYELGRPAANT++GP+R+H+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 247 TRIL 258
TRI+
Sbjct: 76 TRII 79
Score = 86.2 bits (204), Expect = 9e-17
Identities = 36/45 (80%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
EQF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 164 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 138 bits (334), Expect = 2e-32
Identities = 81/171 (47%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Frame = +3
Query: 36 HWHKAKGPTGGKRAPHTQEEEV*VRASRCKHQARSSAYALRSFTWWKY*VPCAASGHR*L 215
+WHK + TGGKR P+ ++ R A ++ R + V +R L
Sbjct: 7 NWHKRR-KTGGKRKPYHKK-----RKYELGRPAANTKIGPRRIHTVR--VRGGNKKYRAL 58
Query: 216 LLGIGMFN-------SQNPYIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 374
L +G F+ + IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY
Sbjct: 59 RLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYA 118
Query: 375 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALESNSTRG 527
LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LE +G
Sbjct: 119 LPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 113 bits (273), Expect = 4e-25
Identities = 49/64 (76%), Positives = 56/64 (87%)
Frame = +1
Query: 67 GNVRPIRKKRKYELGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 246
G +P KKRKYELGRPAANT++GP+R+H+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 247 TRIL 258
TRI+
Sbjct: 76 TRII 79
Score = 86.2 bits (204), Expect = 9e-17
Identities = 36/45 (80%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
EQF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 164 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 136 bits (329), Expect = 7e-32
Identities = 63/91 (69%), Positives = 74/91 (81%)
Frame = +3
Query: 255 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 434
IDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+N
Sbjct: 59 IDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILN 118
Query: 435 KKRSQKTARKYLARQRLAKVEGALESNSTRG 527
KKRS+K +KY R++ AK+ LE +G
Sbjct: 119 KKRSKKIQKKYDERKKNAKISSLLEEQFQQG 149
Score = 86.2 bits (204), Expect = 9e-17
Identities = 36/45 (80%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
EQF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 144 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
Score = 62.5 bits (145), Expect = 1e-09
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +1
Query: 67 GNVRPIRKKRKYELGRPAANTRLGPQRMHSVRSRGGNTK 183
G +P KKRKYELGRPAANT++GP+R+H+VR RGG T+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 86.2 bits (204), Expect = 9e-17
Identities = 36/45 (80%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
EQF G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 36 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 80
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3
Query: 405 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALESNSTRG 527
LT EE I+NKKRS+K +KY R++ AK+ LE +G
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 41
>BC038797-1|AAH38797.1| 787|Homo sapiens protocadherin beta 15
protein.
Length = 787
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 64 VGNVRPIRKKRKYELG-RPAANTRLGPQ-RMH-SVRSRGGNTKYRALRLDT 207
+G V P++K R ++G N + P H S R+RG KY L LDT
Sbjct: 148 LGTVFPLKKARDLDVGSNNVQNYNISPNSHFHVSTRTRGDGRKYPELVLDT 198
>AF217742-1|AAK51610.1| 787|Homo sapiens protocadherin-beta15
protein.
Length = 787
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 64 VGNVRPIRKKRKYELG-RPAANTRLGPQ-RMH-SVRSRGGNTKYRALRLDT 207
+G V P++K R ++G N + P H S R+RG KY L LDT
Sbjct: 148 LGTVFPLKKARDLDVGSNNVQNYNISPNSHFHVSTRTRGDGRKYPELVLDT 198
>AF152494-1|AAD43755.1| 787|Homo sapiens protocadherin beta 15
protein.
Length = 787
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 64 VGNVRPIRKKRKYELG-RPAANTRLGPQ-RMH-SVRSRGGNTKYRALRLDT 207
+G V P++K R ++G N + P H S R+RG KY L LDT
Sbjct: 148 LGTVFPLKKARDLDVGSNNVQNYNISPNSHFHVSTRTRGDGRKYPELVLDT 198
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,300,669
Number of Sequences: 237096
Number of extensions: 2178232
Number of successful extensions: 4594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4594
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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