Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30551
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   122   2e-28
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    27   9.3  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  122 bits (294), Expect = 2e-28
 Identities = 55/84 (65%), Positives = 66/84 (78%)
 Frame = +3

Query: 255 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 434
           +D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+N
Sbjct: 79  VDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILN 138

Query: 435 KKRSQKTARKYLARQRLAKVEGAL 506
           KKRS  T +KY  RQ+ A V+  L
Sbjct: 139 KKRSHHTMKKYTERQKTAAVDALL 162



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 44/65 (67%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = +1

Query: 67  GNVRPI-RKKRKYELGRPAANTRLGPQRMHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 243
           G  +P+  KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRLD+GNFSW SE +TR
Sbjct: 15  GATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTR 74

Query: 244 KTRIL 258
           KTRI+
Sbjct: 75  KTRIV 79



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 33/45 (73%), Positives = 42/45 (93%)
 Frame = +2

Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
           EQF+TGRLLA ++S PGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 164 EQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
            C26C6.1a protein.
          Length = 1883

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 172  GNTKYRALRLDTGNFSWGSECSTRKTRILMLC-IMHLTMNW 291
            G T ++ +R +TG F W  +C      +  LC +M +   W
Sbjct: 1189 GKTYFQQIRSETGKFFWLGQCVLVFNNMKPLCDVMKINKIW 1229


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
            protein C26C6.1a protein.
          Length = 1883

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 172  GNTKYRALRLDTGNFSWGSECSTRKTRILMLC-IMHLTMNW 291
            G T ++ +R +TG F W  +C      +  LC +M +   W
Sbjct: 1189 GKTYFQQIRSETGKFFWLGQCVLVFNNMKPLCDVMKINKIW 1229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,767
Number of Sequences: 27780
Number of extensions: 313774
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)