Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30551
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri... 89 3e-18
At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso... 88 4e-18
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa... 34 0.099
At4g37760.1 68417.m05345 squalene monooxygenase, putative / squa... 32 0.40
At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p... 29 2.8
At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa... 28 6.5
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i... 27 8.6
>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
Length = 210
Score = 88.6 bits (210), Expect = 3e-18
Identities = 43/65 (66%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Frame = +1
Query: 67 GNVRPIRKKRKYELGRPAANTRLGPQR-MHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 243
G + RKKRKYELGR ANT+L + + +R RGGN K+RALRLDTGNFSWGSE TR
Sbjct: 16 GKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTR 75
Query: 244 KTRIL 258
KTRIL
Sbjct: 76 KTRIL 80
Score = 84.6 bits (200), Expect = 5e-17
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
EQF +GRLLAC+ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 161 EQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205
Score = 81.4 bits (192), Expect = 5e-16
Identities = 44/91 (48%), Positives = 55/91 (60%)
Frame = +3
Query: 255 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 434
+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y HY + +GRKK + EE
Sbjct: 80 LDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV--- 136
Query: 435 KKRSQKTARKYLARQRLAKVEGALESNSTRG 527
K+S RK RQ ++ LE + G
Sbjct: 137 -KKSNHVQRKLEMRQEGRALDSHLEEQFSSG 166
>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
protein S8 - Zea mays, PIR:T04088
Length = 222
Score = 88.2 bits (209), Expect = 4e-18
Identities = 52/101 (51%), Positives = 62/101 (61%), Gaps = 10/101 (9%)
Frame = +3
Query: 255 IDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EA 416
+DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A T E
Sbjct: 80 LDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEG 139
Query: 417 EEAII----NKKRSQKTARKYLARQRLAKVEGALESNSTRG 527
EEA + K+S RK +RQ ++ +E G
Sbjct: 140 EEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180
Score = 87.8 bits (208), Expect = 6e-18
Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Frame = +1
Query: 67 GNVRPIRKKRKYELGRPAANTRLGPQR-MHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 243
G + RKKRKYE+GR ANT+L + + +R RGGN K+RALRLDTGN+SWGSE +TR
Sbjct: 16 GKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTR 75
Query: 244 KTRIL 258
KTR+L
Sbjct: 76 KTRVL 80
Score = 82.6 bits (195), Expect = 2e-16
Identities = 34/45 (75%), Positives = 42/45 (93%)
Frame = +2
Query: 509 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 643
+QF +GRLLAC++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 175 DQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219
>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
Length = 585
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 367 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSIYGFCELNIPIP 221
C Y L GV S+ +A L+ + R SL+ + +IY C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540
>At4g37760.1 68417.m05345 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
Length = 525
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 367 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSIYGFCELNIPIP 221
C Y L GV S+ +A L+ + R SL+ + +I+G L +P+P
Sbjct: 424 CFDYLSLGGVCSSGPVALLSGLNPRPMSLVLHFFAVAIFGVGRLLVPLP 472
>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 346
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = -2
Query: 359 IPLPEWSCIYYNNCI-----LDKGLCTHQFIVRCIIHNINIRVL 243
I +P I +NN + +C HQF V C+ H I +++L
Sbjct: 149 ICMPATCSICFNNVLEAEKMFSVAICGHQFCVECVKHYIEVKLL 192
>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
protein / Kunitz family protein similar to trypsin
inhibitor propeptide [Brassica oleracea] GI:841208;
contains Pfam profile PF00197: Trypsin and protease
inhibitor
Length = 215
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 288 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 416
L T L NA VVD ++ES+Y LP+ R +G LT A
Sbjct: 16 LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59
>At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger)
family protein contains Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 503
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = -2
Query: 302 LCTHQFIVRCIIHNINIRVL-----RVEHSDPQEKLPVSR 198
LC HQF V C+ I +R+L R H + KL V R
Sbjct: 173 LCGHQFCVECMTQYIKVRLLEESEMRCPHYQCESKLTVVR 212
>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
Length = 531
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 367 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSIYGFCELNIPIP 221
C Y L G+ ++ ++ L+ + R +L+ + ++YG L IP P
Sbjct: 430 CFDYLGLGGMCTSGPVSLLSGLNPRPLTLVCHFFAVAVYGVIRLLIPFP 478
>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
identical to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 439
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 79 PIRKKRKYELGRPAANTRLGPQRMHSVRSRGGN 177
P+R+ R ++ R + PQR S S GGN
Sbjct: 340 PVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,648
Number of Sequences: 28952
Number of extensions: 290323
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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