Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30549
         (797 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000038C8DC Cluster: COG1106: Predicted ATPases; n=1;...    36   1.6  
UniRef50_Q5P8Y3 Cluster: Putative additional subunit of nitric o...    34   3.6  
UniRef50_Q7RS84 Cluster: TERT; n=10; Eukaryota|Rep: TERT - Plasm...    34   3.6  
UniRef50_Q3A8T9 Cluster: Putative restriction enzyme; n=1; Carbo...    34   4.8  
UniRef50_Q0YKL6 Cluster: Radical SAM; n=1; Geobacter sp. FRC-32|...    33   8.3  

>UniRef50_UPI000038C8DC Cluster: COG1106: Predicted ATPases; n=1;
           Nostoc punctiforme PCC 73102|Rep: COG1106: Predicted
           ATPases - Nostoc punctiforme PCC 73102
          Length = 438

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
 Frame = -3

Query: 708 FRLDQLTKKKIIRNPLNGFLLKNIWAHINIYNKNHSISLH-DGSLNKSLTSQRAGERK-T 535
           F+LD ++ +K  R  L   L  NI+ +  + N+NH IS   D +LN +  ++R   R+  
Sbjct: 109 FKLDSISAQKPTRFELRTLLDNNIYTYSLVINQNHIISEKLDYALNTTKRTRRLFNRQWD 168

Query: 534 EIPTCFLTLRAFDNYISSFGQY*NNRKINFLLL 436
           EI   F+  +  D++  S  Q  +N + N L +
Sbjct: 169 EISKKFI-WKTGDDFAGSHNQLQDNIRENDLFI 200


>UniRef50_Q5P8Y3 Cluster: Putative additional subunit of nitric
           oxide reductase (Nor) complex, membrane protein; n=3;
           Betaproteobacteria|Rep: Putative additional subunit of
           nitric oxide reductase (Nor) complex, membrane protein -
           Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum
           (strain EbN1))
          Length = 198

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -3

Query: 297 VIKILQYVDKYSF-ISLNTSNFTLYKLALTIFIRLHV 190
           V+KI +Y DK    ISL++S F ++ L+LT F  +HV
Sbjct: 110 VVKIFEYADKIGAGISLSSSTFYMFYLSLTFFHFMHV 146


>UniRef50_Q7RS84 Cluster: TERT; n=10; Eukaryota|Rep: TERT -
           Plasmodium yoelii yoelii
          Length = 2111

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
 Frame = -3

Query: 687 KKKIIRNPLNGFLLKNIWAHINIYN----KNHSISLHDGSLNKSLTSQRAGERKTEIPTC 520
           KK+I+RN      ++N+    N+ N    +NH I + +  L+K  TSQ+   +K ++P  
Sbjct: 200 KKEILRNEKKNKTIQNLQNVQNVQNVQNVQNHIIEMENNGLHKIDTSQKIKLKKKQLPNI 259

Query: 519 FLTLRAFDNYISSFGQY*NNRKI-NFLLLISKTLYYINNTTK*SKCSLN 376
           +       N    F    ++  + N+ +   K    +N+  K +K  +N
Sbjct: 260 YFFHNNDKNENRHFNNVTDSLNMTNYEMRTEKETKMLNDKKKWNKIIIN 308


>UniRef50_Q3A8T9 Cluster: Putative restriction enzyme; n=1;
           Carboxydothermus hydrogenoformans Z-2901|Rep: Putative
           restriction enzyme - Carboxydothermus hydrogenoformans
           (strain Z-2901 / DSM 6008)
          Length = 1207

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -3

Query: 657 GFLLKNIWAHINIYNKNHSISLHDGSLNKSLTSQRAGERKTEIPTCFLTLRAFDNYISSF 478
           G++   +W  I+ Y K   I +   S+   +  + +G  +  +P C  T+R  + YI + 
Sbjct: 541 GYMTPFVWMFISSYEKLREIIIKSKSITSLVQLEYSGFEEATVPICTFTIR--NAYIPAK 598

Query: 477 GQY 469
           G+Y
Sbjct: 599 GEY 601


>UniRef50_Q0YKL6 Cluster: Radical SAM; n=1; Geobacter sp.
           FRC-32|Rep: Radical SAM - Geobacter sp. FRC-32
          Length = 301

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = -3

Query: 660 NGFLLKNIWAHINIYNKNHSISLH--DGSLNKSLTSQRAGERKTEIPTCFLTLRAFDNYI 487
           NG LLK IW  I+ Y    SISL      L+K +T +   +  T++       + +D+  
Sbjct: 97  NGLLLKQIWKEISPYLSWISISLDAPSAELDKIITGELGAQHFTQVVEFLRYYKEYDDLT 156

Query: 486 S--SFGQY*NNRKINFLLLISKTLY 418
           +    G     + I+ + L+ K ++
Sbjct: 157 AKVKLGTVVTKKNIDHVALLGKIMF 181


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,186,941
Number of Sequences: 1657284
Number of extensions: 14485984
Number of successful extensions: 27618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27586
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)