Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30549
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0104 + 14626756-14626828,14627658-14627791,14628544-146285...    29   5.7  
10_01_0099 - 1202668-1203023,1203097-1206037                           28   7.5  
01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343...    28   9.9  

>09_04_0104 +
           14626756-14626828,14627658-14627791,14628544-14628593,
           14628684-14628776,14628897-14628988,14629279-14629385,
           14631536-14631712,14631808-14632476
          Length = 464

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 708 FRLDQLTKKKIIRNPLNGFLLKNIWAHINIYNKNHSIS 595
           FRL  LT+  + + P++    K+IWA   I+ K +S++
Sbjct: 221 FRLPSLTEPSLSKIPIDKKPAKDIWAICKIFKKPNSMA 258


>10_01_0099 - 1202668-1203023,1203097-1206037
          Length = 1098

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 705 RLDQLTKKKIIRNPLNGFLLKNIWAHINIYNKNHSISLHDGSLNKSLTSQR 553
           +L  L + K+  N +NG +   I   IN+Y+ N S +   GS+   L + R
Sbjct: 540 KLPNLVELKLSSNHVNGVIPPEIGNLINLYSLNLSFNKLSGSIPSQLGNLR 590


>01_06_0849 +
           32433429-32433743,32433840-32434021,32434235-32434310,
           32434413-32434570,32435567-32435738,32435817-32435927,
           32436197-32436280
          Length = 365

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 606 HSISLHDGSLNKSLTSQRAGERKTEIPTCFLTLRAFDNYISSFGQY 469
           H+ S  +G + KS      GE   E+    + LRA    I + GQY
Sbjct: 254 HAKSCKEGMITKSSIMLGLGETDEEVKQAMIDLRAIGVDILTLGQY 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,091,558
Number of Sequences: 37544
Number of extensions: 371477
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)