Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30549
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   7.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   7.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   7.6  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   7.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   7.6  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 498 DNYISSFGQY*NNRKINFLLLISKTLYY 415
           +NYIS+   Y NN   N      K LYY
Sbjct: 87  NNYISNISNYNNNNNYN------KKLYY 108


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 498 DNYISSFGQY*NNRKINFLLLISKTLYY 415
           +NYIS+   Y NN   N      K LYY
Sbjct: 325 NNYISNISNYNNNNNYN------KKLYY 346


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 747 LPPNYYPRGYYP 782
           LPP+Y+P  ++P
Sbjct: 312 LPPSYHPHQHHP 323


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 270 KYSFISLNTSNFTLYKLALTIF 205
           K +  SLN+ NF ++K AL  F
Sbjct: 40  KQNSASLNSENFGIFKRALMGF 61


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 270 KYSFISLNTSNFTLYKLALTIF 205
           K +  SLN+ NF ++K AL  F
Sbjct: 40  KQNSASLNSENFGIFKRALMGF 61


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 270 KYSFISLNTSNFTLYKLALTIF 205
           K +  SLN+ NF ++K AL  F
Sbjct: 40  KQNSASLNSENFGIFKRALMGF 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,268
Number of Sequences: 438
Number of extensions: 5081
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)