Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30548
         (818 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.24 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   1.7  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      23   2.2  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   2.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   5.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   5.1  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   6.7  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   8.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 333 GAAGLHCETFDSDCGFTGAVSG 398
           G +G++C+T D DC  T  ++G
Sbjct: 14  GFSGINCQTNDEDCTETSCMNG 35


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 489 DVPLPAIPGTVRAPGYLHYNT 427
           D+PLPA PG       L+Y+T
Sbjct: 250 DLPLPAAPGGDSQQAALNYST 270


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 242 PSPEVASGCIGRCCPDHGEGDTRALQYKISERCC 141
           P P  +  CIGRC        ++  Q + S  CC
Sbjct: 57  PKPIPSFACIGRCASYIQVSGSKIWQMERSCMCC 90


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 526 QELTTMPPALSPRRTAPGNTRNGTCPG 446
           Q L T  PA S      GN  NG+C G
Sbjct: 431 QHLQTGLPAGSYCDVISGNAENGSCSG 457


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 526 QELTTMPPALSPRRTAPGNTRNGTCPG 446
           Q L T  PA S      GN  NG+C G
Sbjct: 432 QHLQTGLPAGSYCDVISGNAENGSCSG 458


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 406 RSSPDTAPVKPQSLSKVSQCKPAA 335
           ++SP+ A + PQS S  +   P A
Sbjct: 152 KTSPNEASMSPQSTSSNNSASPKA 175


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 406 RSSPDTAPVKPQSLSKVSQCKPAA 335
           ++SP+ A + PQS S  +   P A
Sbjct: 172 KTSPNEASMSPQSTSSNNSASPKA 195


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 342 GLHCETFDSDCGFTGAVSGLDRQYLRSHRY 431
           GL+ ++ ++   FT   S +D +++  HR+
Sbjct: 76  GLYTKSANTIRSFTHVESPIDEKFVHPHRF 105


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 526 QELTTMPPALSPRRTAPGNTRNGTCPG 446
           Q   T  PA S      GN  NG+C G
Sbjct: 432 QHFETGLPAGSYCDVISGNAENGSCSG 458


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,479
Number of Sequences: 336
Number of extensions: 4920
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)