Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30548
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    31   0.26 
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    28   1.4  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   5.6  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   5.6  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    26   5.6  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   7.4  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    25   9.8  

>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 98  DMPKLKALVHVSTAYSNAPRSYIEERVYP-PPHDPDNIVRCTRMLP---PETVEVIA 256
           ++P +   VH+STA+S AP S I   + P P   P N+       P   PE V V++
Sbjct: 718 NVPIVPEAVHLSTAFSTAPVSTIVSNISPLPTVAPPNVSGSPSETPISKPEKVPVVS 774


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = -3

Query: 282  VRMVSL*AIAITSTVSGGSIRVHRTMLSGSWGGGYTRSSI*D--LGALLYAVETWTRAFS 109
            V +V   A ++T+T+  GS+  + T+L+ + G       + +   G +   V + +  ++
Sbjct: 786  VEVVDPEAGSVTTTIYSGSVE-YTTVLADASGSVTGTVEVVEPAAGTVTTTVYSGSEVYT 844

Query: 108  LGMSSANFSSEAVP*TLSVVATWRGSVNLTV 16
              ++SA   SE+VP T+ VV    GSV  T+
Sbjct: 845  TTLASA---SESVPGTVEVVDPEAGSVTTTI 872



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -3

Query: 282 VRMVSL*AIAITSTVSGGSIRVHRTMLSGSWGGGYTRSSI*DL-GALLYAVETWTRAFSL 106
           V ++   A  +T+TV  G+     T+ + S     T   I    G +   V + +  ++ 
Sbjct: 714 VEVIEPAAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEPAAGTVTTTVYSGSEVYTT 773

Query: 105 GMSSANFSSEAVP*TLSVVATWRGSVNLTV 16
            ++SA   SE+VP T+ VV    GSV  T+
Sbjct: 774 TLASA---SESVPGTVEVVDPEAGSVTTTI 800


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 609 QPGFQWGRSFTKHLCVXSGAEK 674
           +PG +W +SF   LCV    +K
Sbjct: 307 EPGIKWSKSFQHFLCVCLDKDK 328


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 515  GQLLHPGRLGDKELNSRGRCSSLTN 589
            GQLL    LG+  +NS G  S+LTN
Sbjct: 1708 GQLLRDCGLGNSSVNSNGIDSALTN 1732


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 474 PGAVRRGLSAGGMVVNSCILAGLETRS*TAGAAV 575
           P A   G +  G++   CI+ G +TR+ TAG  +
Sbjct: 29  PKATSTGTTIVGVIAKDCIVLGADTRA-TAGPII 61


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 375 GFTGAVSGLDRQYLRSHRYYNGDIPGHVPFRVLP-GAVRRGL 497
           G   AV G+D Q+   ++ + GD    VP+   P G   +G+
Sbjct: 61  GIADAVEGIDGQWTSGYQIFYGDSNVSVPYPSKPNGGAYQGI 102


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 480 AVRRGLSAGGMVVNSCILAGLETRS 554
           AVRRG +A  +  N CI+ G+E ++
Sbjct: 26  AVRRGTTAIALRGNECIVIGVERKN 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,671,999
Number of Sequences: 5004
Number of extensions: 82610
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)