Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30548
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 59 5e-09
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 57 1e-08
04_03_0542 + 16940464-16940527,16941906-16942101,16942204-169423... 57 2e-08
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 47 2e-05
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 38 0.007
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949... 38 0.007
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 38 0.010
07_03_0075 - 13096386-13096554,13096642-13096766,13096851-130971... 37 0.022
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138 35 0.068
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782... 31 1.5
09_02_0477 - 9737851-9739356 30 2.5
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007 29 3.4
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 29 3.4
09_02_0331 - 7324332-7325924,7327220-7327402 29 4.4
01_06_0918 + 32990106-32992196 29 4.4
08_02_1619 - 28283250-28285238 29 5.9
03_05_0597 + 25996650-25996707,25998017-25998084,25998672-259987... 28 7.8
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 PNPYTLTKALAESIV-YSHTELPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRG 453
PN Y TKA+ E ++ + +LPV I+RPSI+T+ +EP PGW++ I + +I+ ++
Sbjct: 234 PNTYVFTKAMGEMLLGHLRGDLPVVIIRPSIITSILKEPLPGWMEGIRTIDSVIIGYAKQ 293
Query: 454 TYRSGYCRERYVVDLVP 504
T ++D++P
Sbjct: 294 TLSFFLVDLNLIMDVIP 310
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +2
Query: 5 HSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAY 142
+ AAT F E VA NV G ++ + A+ KLK L+HVSTAY
Sbjct: 118 NGAATTNFYERYDVAFDSNVLGAKNICEFAKKCTKLKMLLHVSTAY 163
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 PNPYTLTKALAESIV-YSHTELPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRG 453
PN Y TKA+ E +V + ELPV I+RPSIV++ +P PGWI+ + II ++
Sbjct: 628 PNTYVFTKAMGEMLVGHFGRELPVVIIRPSIVSSIYHDPLPGWIEGTRTIDSIISAYAKQ 687
Query: 454 TYRSGYCRERYVVDLVP 504
T ++D++P
Sbjct: 688 TIPHFIGAGHVILDVIP 704
Score = 35.5 bits (78), Expect = 0.051
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 5 HSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAY-SNAPRSYIEERVY 181
+ AAT F E V+ NV G + K A+ LK +H+STA+ S + E+V+
Sbjct: 529 NGAATTNFYERYDVSLASNVLGAKYVCKFAKKCANLKMFLHISTAFVSGEQEGLLLEKVF 588
>04_03_0542 +
16940464-16940527,16941906-16942101,16942204-16942365,
16942721-16942802,16942873-16943139,16943285-16943416
Length = 300
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYS-HTELPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRG 453
PN Y LTKA+ E ++ +LPV IVRPSI+T+ Q+P PGWI+ + I + +
Sbjct: 94 PNTYVLTKAMGEMLLRQLGGDLPVVIVRPSIITSTFQDPMPGWIEETRTIDAIFVAYNDQ 153
Query: 454 TYRSGYCRERYVVDLVP 504
T + DL+P
Sbjct: 154 TLPCFIFDGSVIFDLIP 170
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYSHTE--------LPVCIVRPSIVTAASQEPYPGWIDNIYGVTGI 432
PN Y TKA+ E ++ +PV I RPSI+T+ ++P PGWI+ + I
Sbjct: 232 PNTYVFTKAMGEMMLQEQLVAGAGRRHGIPVVIARPSIITSVHRDPLPGWIEGTRTIDAI 291
Query: 433 IMEISRGTYRSGYCRERYVVDLVP 504
I+ ++ + ++D+VP
Sbjct: 292 IIGYAKQSLSCFLADLDLIMDVVP 315
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 HSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPRS-YIEER 175
+ AAT F E VA +NV G L +LA+ L+ +HVSTAY RS ++ER
Sbjct: 118 NGAATTNFYERYDVALDVNVMGVKYLCQLAKKCANLEVFLHVSTAYVCGERSGVVQER 175
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 5 HSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPR-SYIEERVY 181
+ AAT F V+ +NV G L +LA+ LK +HVSTAY+ + I+ER +
Sbjct: 123 NGAATTNFYGRYDVSLDVNVLGVKHLCQLAKKCRGLKVFLHVSTAYAGGEQEGLIQERAF 182
Score = 35.5 bits (78), Expect = 0.051
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Frame = +1
Query: 280 NPYTLTKALAESIV-----YSHTELP-------VCIVRPSIVTAASQEPYPGWIDNIYGV 423
N Y TKA+ E ++ S + P V +VRPSI+T+ ++P PGW+ +
Sbjct: 237 NTYVFTKAMGEMVLSRMLLQSSSPAPAITGAGGVVVVRPSIITSIQRDPVPGWMQGTRTI 296
Query: 424 TGIIMEISRGTYRSGYCRERYVVDLVP 504
+I+ ++ V+D++P
Sbjct: 297 DTLIIGYAKQNLSCFLGDLDLVMDVIP 323
>04_03_0539 +
16892822-16892900,16894004-16894107,16894718-16894917,
16896078-16896178,16897546-16897735,16898377-16898458,
16899374-16899501,16899846-16900026
Length = 354
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +2
Query: 5 HSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAY 142
+ AAT F E VA N G L + A+ LK ++HVSTAY
Sbjct: 118 NGAATTNFMERYDVALATNTTGVVHLCQFAKQCDNLKMVLHVSTAY 163
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 37.9 bits (84), Expect = 0.010
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +2
Query: 5 HSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAY 142
+ AAT F E VA N G L + A+ LK ++HVSTAY
Sbjct: 118 NGAATTNFMERYDVALATNAAGVMHLCQFAKQCDNLKMVLHVSTAY 163
>07_03_0075 -
13096386-13096554,13096642-13096766,13096851-13097117,
13097506-13097587,13097956-13098172,13098260-13098360,
13098425-13098627,13099261-13099334,13100246-13100429
Length = 473
Score = 36.7 bits (81), Expect = 0.022
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 5 HSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSN 148
H AATV F E A +N G ++ A L+ ++ VSTAY N
Sbjct: 144 HMAATVNFAERYDTALAINTMGVKHMIDFASKCTNLELVLLVSTAYVN 191
>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
Length = 244
Score = 35.1 bits (77), Expect = 0.068
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 351 CETFDSDCGFTGAVSGLDRQYLRSHRYYNGDIPGHVPF--RVLPGA 482
C DS CGF+G+V+ L + + H++ + + + PF RV PGA
Sbjct: 69 CFCPDSGCGFSGSVATLWKHFTTQHKWPSTEFKYYTPFDLRVKPGA 114
>06_03_0501 +
21476715-21476785,21477045-21477786,21478097-21478246,
21478350-21478589,21479968-21480048,21480144-21480185,
21480953-21481033,21481271-21481368,21482574-21482667,
21482733-21482861,21483881-21483931,21484023-21484049,
21484280-21484387,21484956-21485201
Length = 719
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 188 EGDTRALQYKISERCCTLWRRGLEPSAW 105
+G RA Q S+RC +WRRG P AW
Sbjct: 689 DGLLRAWQTAASDRCSIVWRRGRRP-AW 715
>09_02_0477 - 9737851-9739356
Length = 501
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 340 PVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRGT 456
P+C+ +P+ AA++ + W+DN ++ I+ GT
Sbjct: 279 PLCLAQPASAPAATRPSWMAWLDNKAAAGQSVLYIALGT 317
>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
Length = 952
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 211 PMHPDATSGDG*SYRDSL-QGDHPNPYTLTKALAESIVYSHTELPVCIVRPSIVTAASQE 387
PM P G ++ D++ + HP+PY A+A I +VTAA+ E
Sbjct: 567 PM-PKKAYGKSDAFADTIPRASHPSPYAAEAAVAAD--------EAAIAEAVMVTAAAYE 617
Query: 388 PYPGWIDNIYGVTGIIME 441
GW +I V G + E
Sbjct: 618 KKTGWGSDIGWVYGTVTE 635
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Frame = -1
Query: 248 LQPSPEVASGCIGRCCPDH---GEGDTRAL-----QYKISERCCTLWRRGLEPSAWACLQ 93
L+P+ VAS C GR G G RA+ + +R CT WR G+ +A A +
Sbjct: 14 LRPACRVASQCGGRPSTRRRGAGGGPRRAVPQPPVRRPSGDRACTPWRGGVGAAAPAPVT 73
Query: 92 PTSAA 78
P +AA
Sbjct: 74 PVAAA 78
>09_02_0331 - 7324332-7325924,7327220-7327402
Length = 591
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -2
Query: 334 PCDCTLWTQPTP*SGCRG*DGLPVSYRDNFNRLRR*HPGASDDVVRIMG 188
P D T QP P +G D P R R+R PGA D +V +G
Sbjct: 132 PDDTTTEDQPRPDAGTINGDDCPCQIRRVHGRVRDIDPGAYDPMVVSLG 180
>01_06_0918 + 32990106-32992196
Length = 696
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYSHTELPVCIVRPSI 366
P Y + LA +++Y H E P C+V I
Sbjct: 458 PTRYNVALGLASALLYLHEECPQCVVHRDI 487
>08_02_1619 - 28283250-28285238
Length = 662
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 551 ELNSRGRCSSLTNV-TFGVHSTRIPMGAK 634
EL SRGRCS T+V FG+ + MG K
Sbjct: 535 ELQSRGRCSPRTDVYAFGILLLELLMGRK 563
>03_05_0597 +
25996650-25996707,25998017-25998084,25998672-25998747,
25999334-25999441,25999570-25999668,26000149-26000274,
26001041-26001174
Length = 222
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 704 WVFRIFFIST-GINGFELNTVFGED-LTWSISLAR 802
W+ +IFFI T G+ G++ G++ L SISL R
Sbjct: 82 WILKIFFIGTAGLVGYQFFPYMGDNLLQQSISLLR 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,785,582
Number of Sequences: 37544
Number of extensions: 673504
Number of successful extensions: 1887
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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