Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30548
(818 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0) 46 5e-05
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 31 1.5
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 30 2.6
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
Length = 373
Score = 45.6 bits (103), Expect = 5e-05
Identities = 27/84 (32%), Positives = 41/84 (48%)
Frame = +2
Query: 2 FHSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPRSYIEERVY 181
FHSAATVRF E L V +A VHVS+ Y+N R ++E++Y
Sbjct: 109 FHSAATVRFDEELRVFFICP-----------------QAFVHVSSTYANCDRDVVDEKIY 151
Query: 182 PPPHDPDNIVRCTRMLPPETVEVI 253
PP +P+ ++ + + V+ I
Sbjct: 152 PPSIEPEKLISSLEWMSDDMVKAI 175
Score = 45.6 bits (103), Expect = 5e-05
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYSHTE-LPVCIVRPSIVTAASQEPYPGWIDNI--YGV-TGIIMEI 444
PN YT TK+LAE ++ LPV I RPSI+ A+ +EP P D I Y TG++ I
Sbjct: 184 PNTYTFTKSLAEHVLLQEASGLPVSIFRPSIIGASFKEPLPVPSDGIPVYNCGTGVLNPI 243
Query: 445 SRG 453
+ G
Sbjct: 244 TWG 246
>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
Length = 798
Score = 30.7 bits (66), Expect = 1.5
Identities = 28/92 (30%), Positives = 37/92 (40%)
Frame = +2
Query: 17 TVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPRSYIEERVYPPPHD 196
T RF +PL TT+NV+G K + L L HV T N + E PP +
Sbjct: 365 TPRFVQPLLKKTTVNVKGPDQKDKAEPEPLHLPKLHHVET--PNKDTTQTEPDPSPPINV 422
Query: 197 PDNIVRCTRMLPPETVEVIAIAYRETILTPTP 292
I R P + A+ ET +T P
Sbjct: 423 SAGIKRFQPGQDPVSKPGHAVQDTETTITKKP 454
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -2
Query: 505 PALSPRRTAPGNTRNGTCPGISPXXXXXXXXYCRSSPDTAPV-KPQSLSKVSQ 350
P LS R T P RN TCP P + T+P KP S+ +Q
Sbjct: 265 PHLSSRETPPVQPRNHTCPAEKPHLSSLETPPVQPRNPTSPAGKPYHSSRETQ 317
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 526 QELTTMPPALSPRRTAPGNTRNGTCPGISP 437
+E+ +PP L PR+ + G +R TCP + P
Sbjct: 1395 KEVEELPPPL-PRKLSKGMSRQNTCPNMVP 1423
>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 268 PVSYRDNFNRLRR*HPGAS--DDVVRIMGRGIHALFNIRSRSVAVRCGDV 125
PVS NF LR H G +D+V M RG++A+ + +++ C DV
Sbjct: 205 PVSTFANFLILRTPHSGGRGRNDLVHQMSRGLNAIHSKYMATLSPECRDV 254
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/66 (24%), Positives = 25/66 (37%)
Frame = -2
Query: 496 SPRRTAPGNTRNGTCPGISPXXXXXXXXYCRSSPDTAPVKPQSLSKVSQCKPAAPCDCTL 317
+P + +P T P +P + SP T P+KP + P P T
Sbjct: 1295 TPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPS--PSTTSTTPIKPSPSTT 1352
Query: 316 WTQPTP 299
+P+P
Sbjct: 1353 PIKPSP 1358
>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1185
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Frame = -2
Query: 406 RSSPDTA--PVKPQSLS-KVSQCKP------AAPCDCTLWTQPTP*SGCRG*DGLPVSYR 254
RSSPD A P KP S ++S P + P W+ P P G G + VS
Sbjct: 563 RSSPDGAELPPKPSGSSGEISSKTPDVEASRSPPTSGDFWSSPPPPLGLSGWENFIVSAP 622
Query: 253 DNF 245
DNF
Sbjct: 623 DNF 625
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 28.3 bits (60), Expect = 7.9
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Frame = +1
Query: 562 PGPLFQSYKRDFRGPFNPDSNGGEVLPST------YALXVGPKKRIPTKLPLNVGIPNFL 723
PGP + +RGP P GE P Y GP +P + G L
Sbjct: 1075 PGPPGYPGFKGYRGPQGPPGIAGEPGPPGIGGGIGYMGPPGPDAIMPNCSYICEGERTLL 1134
Query: 724 HFNRN*RV*IKHRFWGR 774
H + V +K FWGR
Sbjct: 1135 HCKQYEMVNVKRAFWGR 1151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,373,094
Number of Sequences: 59808
Number of extensions: 716041
Number of successful extensions: 1803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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