Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30548
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    76   3e-14
U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium transp...    30   1.7  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    28   7.0  
U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6...    28   7.0  
L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with...    28   7.0  
L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with...    28   7.0  
AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threon...    28   7.0  
Z78015-2|CAB01431.1|   97|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AL032654-11|CAB63389.2|  529|Caenorhabditis elegans Hypothetical...    28   9.2  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = +1

Query: 268 GDHPNPYTLTKALAESIVYSHT-ELPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEI 444
           G  PN YTLTKALAES + +   ++PV I+RPSIV A  Q P PGW DNI G TGI   +
Sbjct: 199 GLRPNTYTLTKALAESTIETEAKDIPVIIIRPSIVGAMWQGPLPGWTDNINGPTGIFAAV 258

Query: 445 SRGTYRSGYCRERYVVDLVPV 507
            RG   +         D++PV
Sbjct: 259 GRGVLTNMCGSSESKADIIPV 279



 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 36/83 (43%), Positives = 47/83 (56%)
 Frame = +2

Query: 5   HSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPRSYIEERVYP 184
           HSAATV+F E L  A T+NV GT  ++ L   +  LK LVHVSTAY+N  R    E++Y 
Sbjct: 111 HSAATVKFDEHLRAAVTMNVIGTKRIIDLCHQIKDLKVLVHVSTAYANCDRFETTEKIYK 170

Query: 185 PPHDPDNIVRCTRMLPPETVEVI 253
            P  P  +V     +  ET+  I
Sbjct: 171 SPMAPQKLVDALSWMDDETLTKI 193


>U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium
           transporter homolog protein4 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 492 HDVPLPAIPGTVRAPGYLHYNTGDSVDIVDP 400
           H VP  A+ G +   G+L +N G   DIV P
Sbjct: 207 HSVPFAALGGFILMFGFLAFNGGSMADIVKP 237


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
           protein ZK970.5 protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 339 AGLHCETFDSDCGFTGAVSGLDRQYLRSHRY-YNGDIPGHVPFRV--LPGAVRRGLS 500
           A L  E       +TG    L  QYL+SH Y  N D   HV +    L   VR GL+
Sbjct: 44  AALKTENGSIGWAYTGGAVPLALQYLKSHGYMLNFDFEFHVEYTECDLANTVRAGLN 100


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 679 IPTKLPLNVGIPNFLHF 729
           +PT  PLN+ +PNF++F
Sbjct: 113 LPTMAPLNLSLPNFMNF 129


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 679 IPTKLPLNVGIPNFLHF 729
           +PT  PLN+ +PNF++F
Sbjct: 113 LPTMAPLNLSLPNFMNF 129


>U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6
           protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 38  LHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPRSYIEERVYPPP 190
           +H+  T NV+G ++ LK  + +P    +VH    +          R+ PPP
Sbjct: 515 MHLQKT-NVEGHSTSLKAKQHVPPFDGIVHNDPNFDEMNDVICVRRIRPPP 564


>L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 53  TLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPRSYIEERVYPPPH-DPDNIVRCTRML 229
           T+  +G  +L K  E  PKL+ L        +A  +YI + + P  H    N+  C   L
Sbjct: 638 TVLPKGAKALAKTLESWPKLEVLNLSDCLIRDAGCNYIIDHLNPQHHRHLKNVYLCGNEL 697

Query: 230 PPETVEVIAIAYRE-TILTPTP 292
            P   +++   + +   LTP P
Sbjct: 698 TPPVAKLLIQKWSKFDGLTPKP 719


>L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           a protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 53  TLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPRSYIEERVYPPPH-DPDNIVRCTRML 229
           T+  +G  +L K  E  PKL+ L        +A  +YI + + P  H    N+  C   L
Sbjct: 675 TVLPKGAKALAKTLESWPKLEVLNLSDCLIRDAGCNYIIDHLNPQHHRHLKNVYLCGNEL 734

Query: 230 PPETVEVIAIAYRE-TILTPTP 292
            P   +++   + +   LTP P
Sbjct: 735 TPPVAKLLIQKWSKFDGLTPKP 756


>AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threonine
           kinase SMA-6 protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 38  LHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPRSYIEERVYPPP 190
           +H+  T NV+G ++ LK  + +P    +VH    +          R+ PPP
Sbjct: 515 MHLQKT-NVEGHSTSLKAKQHVPPFDGIVHNDPNFDEMNDVICVRRIRPPP 564


>Z78015-2|CAB01431.1|   97|Caenorhabditis elegans Hypothetical
           protein R02D5.4 protein.
          Length = 97

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 247 SYRDSLQGDHPNPYTLTKALAESIVYSHTELPVCIVRPSIVTAASQE 387
           +Y DS++   P  Y +T A   S  ++  ELP      + +  A  E
Sbjct: 16  TYEDSIKSYSPPKYDMTPATTNSTTHNSMELPTSSATTARIEGARME 62


>AL032654-11|CAB63389.2|  529|Caenorhabditis elegans Hypothetical
           protein Y52B11A.7 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 280 NPYTLTKALAESIVYSHTELPVCIVRPSIVTAASQEPY 393
           +P+ LT +    ++ S   L   I+ PS VTA    PY
Sbjct: 469 SPFILTPSALSPLILSPFALSPSILSPSFVTAVIMSPY 506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,999,337
Number of Sequences: 27780
Number of extensions: 517943
Number of successful extensions: 1207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)