Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30548
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.64 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.64 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.4  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   4.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   7.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 715 SEYPHSTVTSLEFFFSAPLXTHKCLVKLR 629
           S+  H    ++EF+++  +  HK +VKLR
Sbjct: 629 SDESHWNDLAMEFYYNRSIPDHKRIVKLR 657



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 429 YYNGDIPGHVPFRVLPGAVRRGLSAGGMVVNSCIL 533
           YYN  IP H     L G++      GG    S +L
Sbjct: 642 YYNRSIPDHKRIVKLRGSIIDHSYGGGFGFGSAVL 676


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 715 SEYPHSTVTSLEFFFSAPLXTHKCLVKLR 629
           S+  H    ++EF+++  +  HK +VKLR
Sbjct: 667 SDESHWNDLAMEFYYNRSIPDHKRIVKLR 695



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 429 YYNGDIPGHVPFRVLPGAVRRGLSAGGMVVNSCIL 533
           YYN  IP H     L G++      GG    S +L
Sbjct: 680 YYNRSIPDHKRIVKLRGSIIDHSYGGGFGFGSAVL 714


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 547 VSKPARMQELTTMPPALSPRRTAPGNTRNGTC 452
           + KP      TT  P  S + T   N  N TC
Sbjct: 318 LEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTC 349


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 607 MDPESHVCKTGTAAPAV*-LLVSKPARMQELTTMPPALSPRRTAP 476
           + P  +   +G + P++  +  + P     + T+ P +SP RT+P
Sbjct: 379 ISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSP 423


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 518 QLLHPGRLGDKELNSRGRCSSLTNVTFGVH 607
           ++L PG L    +++ G CSSL +V+  V+
Sbjct: 910 KVLSPGELLSSCVSNDGGCSSLVDVSTPVN 939


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 816 TREKARAREIDHVKSSPKTVFNSNPL 739
           ++E++R R        PK + N+NPL
Sbjct: 63  SKERSRNRTERERSKEPKIISNNNPL 88


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 STSPQRTATLRDLILKSACIPLPM 194
           + S    A LR++   S CIPLP+
Sbjct: 206 AASKAALAKLRNVHSSSFCIPLPV 229


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 258  IAITSTVSGGSIRVHRTMLS 199
            IA  +TVS GS   HR  LS
Sbjct: 1312 IATNTTVSSGSSEDHRRPLS 1331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,568
Number of Sequences: 438
Number of extensions: 6677
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)