Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30548
(818 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to... 65 6e-11
At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to... 64 8e-11
At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to... 64 1e-10
At3g56700.1 68416.m06307 male sterility protein, putative simila... 64 1e-10
At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to... 62 4e-10
At5g22500.1 68418.m02626 acyl CoA reductase, putative / male-ste... 62 6e-10
At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to... 55 7e-08
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica... 50 2e-06
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 31 0.70
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi... 30 2.1
At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)... 29 4.9
At4g39680.1 68417.m05614 SAP domain-containing protein contains ... 28 6.5
At5g45050.2 68418.m05524 disease resistance protein-related simi... 28 8.6
At4g21640.1 68417.m03136 subtilase family protein similar to sub... 28 8.6
>At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 433
Score = 64.9 bits (151), Expect = 6e-11
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYSHTE-LPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRG 453
PN Y TK++ E ++ ++ E LP+ I+RP+++T+ EP+PGWI+ + + +I+ +G
Sbjct: 234 PNTYVFTKSMGEMLLGNYRENLPIVIIRPTMITSTFSEPFPGWIEGLRTIDSVIVAYGKG 293
Query: 454 TYRSGYCRERYVVDLVPV 507
+ V+DL+PV
Sbjct: 294 RLKCFLADPNSVLDLIPV 311
Score = 35.9 bits (79), Expect = 0.032
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 11 AATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPRS 160
AAT F E V ++N G ++L A+ K + L+HVSTAY +S
Sbjct: 121 AATTNFDERYDVGLSVNTFGPLNVLNFAKKCVKGQLLLHVSTAYVRGEKS 170
>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 402
Score = 64.5 bits (150), Expect = 8e-11
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYSHTE-LPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRG 453
PN Y TK++ E ++ H E LP+ I+RP+++T+ EP+PGWI+ + V +I+ +G
Sbjct: 235 PNTYVFTKSMGEMLLGKHKENLPLVIIRPTMITSTLSEPFPGWIEGLRTVDSVIIAYGKG 294
Query: 454 TYRSGYCRERYVVDLVPV 507
+ V D++PV
Sbjct: 295 VLKCFLVDVNSVCDMIPV 312
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 11 AATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAY 142
AAT F E V +N G ++L A+ K++ L+HVSTAY
Sbjct: 121 AATTNFDERYDVGLGINTFGALNVLNFAKKCVKVQLLLHVSTAY 164
>At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 409
Score = 64.1 bits (149), Expect = 1e-10
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYSHTE-LPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRG 453
PN Y TKA+ E ++ + E +P+ I+RP+I+T+ +P+PGWI+ + V +I+ +G
Sbjct: 161 PNTYVFTKAMGEMLLGHYRETMPIVIIRPTIITSTFSDPFPGWIEGLKTVDSVIIFYGKG 220
Query: 454 TYRSGYCRERYVVDLVPV 507
+ ++ V D++PV
Sbjct: 221 ILKCFLVDQKTVCDIIPV 238
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 44 VATTLNVQGTASLLKLAEDMPKLKALVHVSTAY 142
VA +N G ++L A+ K K L+HVST Y
Sbjct: 59 VALGINTFGAINVLNFAKKCVKPKLLLHVSTVY 91
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +1
Query: 280 NPYTLTKALAESIVYSHT-ELPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRGT 456
N YT TKA+ E++++S LPV I+RPSI+ ++ EP+PGWI II+ ++G
Sbjct: 277 NSYTFTKAIGEAVIHSKRGNLPVVIIRPSIIESSYNEPFPGWIQGTRMADPIILAYAKGQ 336
Query: 457 YRSGYCRERYVVDLVPV 507
+ + ++D++PV
Sbjct: 337 ISDFWADPQSLMDIIPV 353
>At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 449
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYSHTE-LPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRG 453
PN Y TK++ E ++ +H E LP+ I+RP+++T+ EP+PGWI+ + V +I+ +G
Sbjct: 235 PNTYVFTKSMGEMLLGNHKENLPLVIIRPTMITSTLFEPFPGWIEGLRTVDSVIIAYGKG 294
Query: 454 TYRSGYCRERYVVDLVP 504
+ V D++P
Sbjct: 295 VLKCFLVDVNSVCDMIP 311
Score = 35.1 bits (77), Expect = 0.056
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 11 AATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAY 142
AAT F E + +N G ++L A+ K + L+HVSTAY
Sbjct: 121 AATTNFDERYDIGLGINTFGALNVLNFAKKCVKAQLLLHVSTAY 164
>At5g22500.1 68418.m02626 acyl CoA reductase, putative /
male-sterility protein, putative similar to acyl CoA
reductase [Simmondsia chinensis] GI:5020215; contains
Pfam profile PF03015: Male sterility protein; identical
to cDNA male sterility 2-like protein GI:1491614
Length = 491
Score = 61.7 bits (143), Expect = 6e-10
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYSHTE-LPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRG 453
PN Y TKA+ E ++ + E LP+ I+RP+++T+ EP+PGWI+ + + +I+ +G
Sbjct: 232 PNTYVFTKAMGEMLMGKYRENLPLVIIRPTMITSTIAEPFPGWIEGLKTLDSVIVAYGKG 291
Query: 454 TYRSGYCRERYVVDLVP 504
+ V DL+P
Sbjct: 292 RLKCFLADSNSVFDLIP 308
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 11 AATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAY 142
AAT F E + +N G ++L A+ K + L+HVSTAY
Sbjct: 121 AATTNFDERYDIGLGINTFGALNVLNFAKKCVKGQLLLHVSTAY 164
>At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein;
No start codon identified, may contain anomalous
splicing at 5' end.
Length = 380
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 PNPYTLTKALAESIVYSHTE-LPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRG 453
PN Y TKA+ E +V + E L + ++RPSI+T+ +EP+PGW + I + + + +G
Sbjct: 125 PNTYVFTKAMGEMMVGTKRENLSLVLLRPSIITSTFKEPFPGWTEGIRTIDSLAVGYGKG 184
Query: 454 TYRSGYCRERYVVDLVP 504
C V D++P
Sbjct: 185 KLTCFLCDLDAVSDVMP 201
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = +2
Query: 11 AATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAY 142
AAT +F E VA +N G ++L A+ K+K LVHVSTAY
Sbjct: 12 AATTKFDERYDVALGINTLGALNVLNFAKRCAKVKILVHVSTAY 55
>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
thaliana)
Length = 616
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +1
Query: 286 YTLTKALAESIVYS-HTELPVCIVRPSIVTAASQEPYPGWIDNIYGVTGIIMEISRGTYR 462
Y TKA+ E ++ S ++PV I+RPS++ + ++P+PGW++ + I++ +G
Sbjct: 357 YVFTKAMGEMMINSTRGDVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGKGQLT 416
Query: 463 SGYCRERYVVDLVPVXXXXXXXXXXXXRQGVKQPGP 570
+ V+D+VP + G+ P
Sbjct: 417 GFLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDP 452
Score = 41.1 bits (92), Expect = 9e-04
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 5 HSAATVRFTEPLHVATTLNVQGTASLLKLAEDMPKLKALVHVSTAYSNAPR 157
+SAA F E VA +N +G +L+ A+ KLK + VSTAY N R
Sbjct: 236 NSAANTTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQR 286
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 31.5 bits (68), Expect = 0.70
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Frame = -2
Query: 571 AAPAV*LLVSKPARMQELTTMPPALSPRRTAPGNT--RNGTCPGISPXXXXXXXXYCRSS 398
+APA+ + S P T PP +P+++ P T ++ + P ++P S
Sbjct: 69 SAPAISISPSTPIPSTPSTPSPPPPAPKKSPPPPTPKKSPSPPSLTPFVPHPTPKKSPSP 128
Query: 397 PDTAPVKPQSLSKVSQCKPAAPCDCTLWTQPTP 299
P T P P K S P+ P + P P
Sbjct: 129 PPT-PSLPPPAPKKSPSTPSLPPPTPKKSPPPP 160
>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 656
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 253 RDSLQGDHPNPYTLTKALAESIVYSHTELPVCIVRPSIVTAASQEPYPGWIDNIYGVTGI 432
R +++G+ P+P+TLT L+ S + L + + + + T P + +Y G
Sbjct: 399 RMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCGE 458
Query: 433 IMEISR 450
IME R
Sbjct: 459 IMESRR 464
>At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)
family protein similar to SP|Q99816 Tumor susceptibility
gene 101 protein {Homo sapiens}; contains Pfam profile
PF05743: Tumour susceptibility gene 101 protein (TSG101)
Length = 368
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 125 HVSTAYSNAPRSYIEERVYPPPHDPDNI-VRCTRMLPPETVEVIAIAYRETIL 280
H+S A+S P Y + R PPP +I +R LPP + A Y++ +
Sbjct: 147 HLSAAFSRDPPLYSQRR--PPPQPSPSIGSGYSRPLPPRQTDDAAEVYKKNAI 197
>At4g39680.1 68417.m05614 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 633
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 167 EERVYPP-PHDPDNIVRCTRMLPPETVEVI 253
+ERV PP P +P N +R R L P T++ +
Sbjct: 444 KERVVPPSPKEPTNSLRIDRFLRPFTLKAV 473
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 53 TLNVQGTASLLKLAEDMPKLKALVHVSTAYSN 148
TLN+QGT D+ L +L+ +ST+Y N
Sbjct: 663 TLNLQGTGVSNLEQSDLKPLTSLMKISTSYQN 694
>At4g21640.1 68417.m03136 subtilase family protein similar to
subtilase SP1 [Oryza sativa] GI:9957714
Length = 733
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 449 GARTVPGIAGSGTSWT*CRWHGGQLLHPGRLGDKELNSRGRCSSLTNVTFGVHSTRIPMG 628
G+ + G+ SG W ++ + LG RG+C S +H + +G
Sbjct: 155 GSEAIIGVVDSGI------WPESKVFNDQGLGPIPKRWRGKCRSGEKFNATMHCNKKLIG 208
Query: 629 AKFYQA 646
AK+YQ+
Sbjct: 209 AKYYQS 214
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,199,314
Number of Sequences: 28952
Number of extensions: 480956
Number of successful extensions: 1222
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -