Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30547
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    27   0.13 
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    26   0.39 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   3.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   6.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.3  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = -3

Query: 422 CTVSFTFILFECGSVQAKPASINLTLLNPFNLLRQRAKSSRDS-----NAHTTHSEGGCK 258
           C V+   ++ +CG V+++   I L +L    L RQ      D      +AH       C 
Sbjct: 299 CVVALIILILQCGRVRSEVVKI-LNVLKKIALRRQTTNGDLDELIVTLSAHYFPVFSACD 357

Query: 257 YFHNPYRRIMSLVWV 213
           YF    + ++ ++ V
Sbjct: 358 YFTIETKTVLDVLGV 372


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
 Frame = -3

Query: 422 CTVSFTFILFECGSVQAKPASINLTLLNPFNLLRQRAKSSRDS-----NAHTTHSEGGCK 258
           C V+   ++ +CG V+++   I L +L    L RQ      D      + H       C 
Sbjct: 225 CVVALIILILQCGRVRSEVVKI-LNVLKKIALRRQTTNGDLDELIVTLSTHYFPVFSACD 283

Query: 257 YFHNPYRRIMSLVWV 213
           YF    + ++ ++ V
Sbjct: 284 YFTIETKTVLDVLGV 298


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 523 ITGRALVQVRQRANNRKTFYYLEQLILKHKAHENTL 630
           ITGR ++++    N   +   ++ L LKHK   ++L
Sbjct: 243 ITGRFVIKILVALNFFTSTLEIDNLYLKHKLEISSL 278


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 664 PSIQPENPCAPKWL 705
           PSI P     PKWL
Sbjct: 202 PSISPSGGFLPKWL 215


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 118 NIVLSVCCTYRSKPLKYVCSLFKGSCR 198
           ++V S  C+  S  L Y+C +    CR
Sbjct: 239 DLVNSFSCSCPSGTLGYICEINVDDCR 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,811
Number of Sequences: 336
Number of extensions: 4166
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)