Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30547
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...   131   9e-32
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    27   2.3  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   4.0  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    26   5.2  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   9.2  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score =  131 bits (317), Expect = 9e-32
 Identities = 60/126 (47%), Positives = 82/126 (65%)
 Frame = +1

Query: 253 KYLQPPSEWVVCALESREXXXXXXXXXXXXSRVKLIDAGFAWTEPHSKRIKVKLTVQGEV 432
           +Y+QPP+ W++  LESRE            ++V+L+DA F WTEPHS+RIKVKLTVQ E 
Sbjct: 67  RYMQPPNNWMIAPLESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEA 126

Query: 433 IGGAVLQQTFIVEFTIQHQMCDACHLQKLKITGRALVQVRQRANNRKTFYYLEQLILKHK 612
               +LQQ+F VEF + +  C  C         +A+ QVRQ+  +++TF YLEQ+ILKHK
Sbjct: 127 FTNTILQQSFQVEFYVNNTQCPDCARTYTPHIWKAVCQVRQKVLHKRTFLYLEQIILKHK 186

Query: 613 AHENTL 630
           AH NT+
Sbjct: 187 AHMNTV 192



 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 23/51 (45%), Positives = 32/51 (62%)
 Frame = +2

Query: 119 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCENICNHP 271
           ILCC+C VP   N + MC+ C++   DIT GIP+++T+  CR CE     P
Sbjct: 22  ILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPP 72


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 599 Y*SIRLMKIL*GIKPKHDGLDFLLFNQRIHARQNG 703
           Y S+ L+K + G K +HD +DF +  +      +G
Sbjct: 112 YASLVLIKNIPGFKTRHDNVDFAIIRENTEGEYSG 146


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 480 NCKFNYKCLLEHCSSD 433
           NCKF  KC LEH   D
Sbjct: 77  NCKFGSKCALEHVLPD 92


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 160 LKYVCSLFKGSCRHHRWNTQ 219
           LK+ C++F+G+ R H + T+
Sbjct: 220 LKHACTMFRGTHRFHSYTTE 239


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
 Frame = -1

Query: 220 FGYSICDVYMSP*TSYTHI*G--VCFYRYSTLTAQYSC 113
           F  S+C     P  SY    G   C Y YSTL A   C
Sbjct: 204 FTCSLCYTVFGPNDSYYEYEGKVYCHYHYSTLFAARCC 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,287,464
Number of Sequences: 5004
Number of extensions: 68280
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)