Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30547
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1016 - 22262760-22264331                                         95   4e-20
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844...    62   5e-10
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    29   5.4  

>10_08_1016 - 22262760-22264331
          Length = 523

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
 Frame = +1

Query: 256 YLQPPSEWVVCALESREXXXXXXXXXXXXS---RVKLIDAGFAWTEPHSKRIKVKLTVQG 426
           YLQPP  W+    ES E                RV L  A F ++EPHSKR+++KL ++ 
Sbjct: 70  YLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRR 129

Query: 427 EVIGGAVLQQTFIVEFTIQHQMCDAC-HLQKLKITGRALVQVRQRANNRKTFYYLEQLIL 603
           EV    VL+QT  VEFT+  ++CDAC   Q       A+VQ+RQ   +R+TF YLEQL+L
Sbjct: 130 EVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLL 189

Query: 604 KH 609
           KH
Sbjct: 190 KH 191



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 119 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCENICNHPLSGL 283
           +LCC C V ++ NP+NMC  C+RA VDIT+G+P+ A + +C  C +    P S L
Sbjct: 24  VLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWL 78


>01_07_0232 +
           42182942-42183490,42183593-42183661,42184320-42184451,
           42184547-42184600,42184714-42184758,42185383-42185522,
           42185777-42185902,42185985-42186002,42186631-42187276,
           42188121-42188843
          Length = 833

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
 Frame = +1

Query: 256 YLQPPSEWVVCALESREXXXXXXXXXXXXSR---VKLIDAGFAWTEPHSKRIKVKLTVQG 426
           YL PP  W+  A ES E                 V L  A F +TEPHS+R+ ++L ++G
Sbjct: 483 YLHPPRLWLRAAPESPELMSLLLRRVDRHIARLGVALAAAEFVFTEPHSRRLMLRLRLRG 542

Query: 427 EVI----GGAVLQQTFIVEFTIQHQMCDACHLQKLK 522
           EV+    GG  L+Q  +VEF +  ++CDAC + + +
Sbjct: 543 EVLHGSGGGVTLEQGHVVEFAVHDRLCDACAMARAR 578



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +2

Query: 65  MKMEYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCR 244
           + M++  P     +     +CC C VP+  N +N C  C+R+ VDI  G+P+ A +  C 
Sbjct: 419 LSMQFLPPRPEPAAAARTSICCTCGVPMAPNAANTCALCIRSRVDIAAGVPRHADVVHCP 478

Query: 245 GCENICNHP 271
            C +  + P
Sbjct: 479 SCSSYLHPP 487


>01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,
            4734038-4734241,4734695-4734802,4735930-4736369,
            4736463-4736541
          Length = 1049

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -2

Query: 618  MSLMLQYQLFKIVKCFPVISSLSYLH*STPSNLELLKMASIAHLMLNCKFNYKCLLEHCS 439
            +  +L    F++  CF    +  +L+ S P N + + + S   L L     +KC+LE   
Sbjct: 855  LPFVLPKYFFRVRPCF---GAELHLYDSNPENRDGISVPSSFQLSLTLCLQWKCVLERSD 911

Query: 438  SDNFALY 418
             D   LY
Sbjct: 912  IDISKLY 918


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,537,926
Number of Sequences: 37544
Number of extensions: 413487
Number of successful extensions: 898
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)