Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30547
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   4e-33
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)               28   7.3  
SB_40528| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)                    28   9.7  
SB_20810| Best HMM Match : rve (HMM E-Value=0.00014)                   28   9.7  
SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score =  138 bits (335), Expect = 4e-33
 Identities = 59/94 (62%), Positives = 77/94 (81%)
 Frame = +1

Query: 349 VKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEFTIQHQMCDACHLQKLKIT 528
           V+LIDAGF WTEPHSKRIKVKLT+Q EV+   +LQQ F+VE+ +Q QMCDACH Q  +  
Sbjct: 94  VRLIDAGFVWTEPHSKRIKVKLTIQKEVMNSTILQQVFVVEYVVQGQMCDACHRQAAQDF 153

Query: 529 GRALVQVRQRANNRKTFYYLEQLILKHKAHENTL 630
            +A+VQVRQ+ +++KTF+YLEQLI+KH  H+NT+
Sbjct: 154 WKAVVQVRQKTSHKKTFFYLEQLIIKHNVHQNTV 187



 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 35/62 (56%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
 Frame = +2

Query: 71  MEYFA-PENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRG 247
           MEY   P NA+  +  +ILCCQC +P   N +NMCV C+R+ VDIT+GIPKQ+TL+FC+ 
Sbjct: 1   MEYLENPVNAAPQH--KILCCQCGLPTPPNSANMCVGCIRSQVDITEGIPKQSTLYFCKN 58

Query: 248 CE 253
           CE
Sbjct: 59  CE 60


>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 896

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 118 NIVLSVCCTYRSKPLKYVCSLFKGSCRHHRWNTQTS 225
           N+ +  CC  R  PL+ VC     +C H  +N +TS
Sbjct: 485 NVKIQKCCFGRVVPLRTVCEK-AFTCGHRSYNPRTS 519


>SB_40528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 370 FAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEFTIQHQMCDACHLQKLKITGR 534
           F  T   S +++ K+T         + Q   +   TIQH MC   HLQK +  G+
Sbjct: 170 FKHTFSKSLQLRFKMTANSSKKRAVLAQSWAVPTTTIQH-MCRYMHLQKTRKLGK 223


>SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)
          Length = 1020

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1

Query: 445 VLQQTFIVEFTIQHQMCDACHLQKLKITGRALVQVRQRANNRKTFYYLEQLILKHKAHEN 624
           VL   +I +  I  +    C L+  K  G  +  VRQR  N +T  Y   + L H+ H N
Sbjct: 369 VLSTLYIKDIGIP-EYYQPCTLKTSKYPG-IINLVRQRHRNTRTSEYPGTINLVHRRHRN 426

Query: 625 T 627
           T
Sbjct: 427 T 427


>SB_20810| Best HMM Match : rve (HMM E-Value=0.00014)
          Length = 801

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 115 TNIVLSVCCTYRSKPLKYVCSLFKGSCRHHRWNTQTSDII 234
           TN +L V C +R +P+ + C + +G     R N +  D +
Sbjct: 205 TNSLLGVLCRFRQEPVAFACDI-EGMFNQVRVNEEDRDYL 243


>SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 8/32 (25%), Positives = 22/32 (68%)
 Frame = +1

Query: 433 IGGAVLQQTFIVEFTIQHQMCDACHLQKLKIT 528
           +G A+  +T ++++ +  + C+AC++Q  K++
Sbjct: 291 VGFAISTETGVLDYAVVSKNCNACNIQSKKLS 322


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -1

Query: 214  YSICDVYMSP*TSYTHI*GVCFYRYSTLTAQYS-CIVA*RSVFWS 83
            Y +C V+    T +     VC   Y   T  Y  CIV  R VFWS
Sbjct: 2855 YRVCTVHYRVCTVHYR---VCTVHYRVCTVHYRVCIVRTRPVFWS 2896


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,351,273
Number of Sequences: 59808
Number of extensions: 506754
Number of successful extensions: 1127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)