Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30547
         (778 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S. cerevi...   156   7e-38
AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.      156   7e-38

>BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S.
           cerevisiae) protein.
          Length = 503

 Score =  156 bits (379), Expect = 7e-38
 Identities = 70/127 (55%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
 Frame = +1

Query: 253 KYLQPPSEWVVCALESREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQGE 429
           +Y QPP  W+ CALESRE             S+V+L+DAGF WTEPHSKR+KVKLT+Q E
Sbjct: 60  RYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKE 119

Query: 430 VIGGAVLQQTFIVEFTIQHQMCDACHLQKLKITGRALVQVRQRANNRKTFYYLEQLILKH 609
           V+ GA+LQQ F+V++ +Q QMC  CH  + K   +A++QVRQ+  ++KTFYYLEQLILK+
Sbjct: 120 VMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKY 179

Query: 610 KAHENTL 630
             H+NTL
Sbjct: 180 GMHQNTL 186



 Score = 77.8 bits (183), Expect = 4e-14
 Identities = 35/67 (52%), Positives = 45/67 (67%)
 Frame = +2

Query: 71  MEYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGC 250
           MEY A E+   S    ILCC+C VPI  NP+N+CVACLR+ VDI+ GIPKQ ++ FC+ C
Sbjct: 1   MEYMA-ESTDRSPG-HILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQC 58

Query: 251 ENICNHP 271
           +     P
Sbjct: 59  QRYFQPP 65


>AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.
          Length = 503

 Score =  156 bits (379), Expect = 7e-38
 Identities = 70/127 (55%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
 Frame = +1

Query: 253 KYLQPPSEWVVCALESREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQGE 429
           +Y QPP  W+ CALESRE             S+V+L+DAGF WTEPHSKR+KVKLT+Q E
Sbjct: 60  RYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKE 119

Query: 430 VIGGAVLQQTFIVEFTIQHQMCDACHLQKLKITGRALVQVRQRANNRKTFYYLEQLILKH 609
           V+ GA+LQQ F+V++ +Q QMC  CH  + K   +A++QVRQ+  ++KTFYYLEQLILK+
Sbjct: 120 VMNGAILQQVFVVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKY 179

Query: 610 KAHENTL 630
             H+NTL
Sbjct: 180 GMHQNTL 186



 Score = 77.8 bits (183), Expect = 4e-14
 Identities = 35/67 (52%), Positives = 45/67 (67%)
 Frame = +2

Query: 71  MEYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGC 250
           MEY A E+   S    ILCC+C VPI  NP+N+CVACLR+ VDI+ GIPKQ ++ FC+ C
Sbjct: 1   MEYMA-ESTDRSPG-HILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQC 58

Query: 251 ENICNHP 271
           +     P
Sbjct: 59  QRYFQPP 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,962,948
Number of Sequences: 237096
Number of extensions: 2404810
Number of successful extensions: 4051
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4049
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)