Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30547
(778 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 129 2e-30
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina... 29 2.8
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul... 29 2.8
AF003146-2|AAB54201.1| 228|Caenorhabditis elegans Hypothetical ... 29 3.7
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 29 4.9
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 29 4.9
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 29 4.9
Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical pr... 28 8.6
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 129 bits (312), Expect = 2e-30
Identities = 63/128 (49%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Frame = +1
Query: 253 KYLQPPSEWVVCALESREXXXXXXXXXXXX-SRVKLIDAGFAWTEPHSKRIKVKLTVQGE 429
+Y PPS W+ LES+E ++V+L DA F WTE HSKRIKVK+T+Q E
Sbjct: 58 RYFVPPSAWMRAELESKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKE 117
Query: 430 VIGGAVLQQTFIVEFTIQHQMCDACHLQKLKITGRALVQVRQRANNRKTFYYLEQLILKH 609
V +LQQ +VEFT+ Q+CD C + K RA VQVRQRA +KT +YLEQL+LKH
Sbjct: 118 VFTNTILQQAVVVEFTVHSQLCDDCRRAEAKDFWRACVQVRQRAEFKKTLFYLEQLLLKH 177
Query: 610 KAHENTLG 633
AH+ G
Sbjct: 178 SAHKECTG 185
Score = 68.5 bits (160), Expect = 5e-12
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +2
Query: 119 ILCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCE 253
I CC+C V IE NP+NMC CLR+ VDIT+GI +Q T++ C+ C+
Sbjct: 13 IACCECGVAIEPNPANMCSGCLRSRVDITEGITRQCTIYMCKFCD 57
>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
receptor T17A3.1 protein.
Length = 1083
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 558 SLSYLH*STPSNLELLKMASIAHLMLNCKFNYKCLLEHCSSDNFAL 421
+LS LH + + L I + + NY C+LE+ +S+NF+L
Sbjct: 603 NLSILHSTEVTEHSQLSFLYIRNATTSASGNYTCVLENQASENFSL 648
>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 1
protein.
Length = 1083
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 558 SLSYLH*STPSNLELLKMASIAHLMLNCKFNYKCLLEHCSSDNFAL 421
+LS LH + + L I + + NY C+LE+ +S+NF+L
Sbjct: 603 NLSILHSTEVTEHSQLSFLYIRNATTSASGNYTCVLENQASENFSL 648
>AF003146-2|AAB54201.1| 228|Caenorhabditis elegans Hypothetical
protein F56F4.4 protein.
Length = 228
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -2
Query: 558 SLSYLH*STPSNLELLKMASIAHLMLNCKFN 466
++ YLH +T + L+LL++++ L LNC F+
Sbjct: 96 AVKYLHYNTSNFLKLLQISTFPLLKLNCSFS 126
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -3
Query: 233 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTIFVYCCLKKRFL 87
+ ++ W F C H+ PL L +GL+ VQHTD + C +L
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL 288
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -3
Query: 233 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTIFVYCCLKKRFL 87
+ ++ W F C H+ PL L +GL+ VQHTD + C +L
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL 288
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -3
Query: 233 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTIFVYCCLKKRFL 87
+ ++ W F C H+ PL L +GL+ VQHTD + C +L
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL 288
>Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical
protein C48G7.1 protein.
Length = 658
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 74 EYFAPENASLSNNTRILCCQCAVPIEANPSNMCVACLRAHVDITD 208
E+ E+ + + R+ C+ P + N +NM V R+ DIT+
Sbjct: 265 EHKRKESLDIDSTPRLASCEYFTPWDTNGTNMQVRTSRSAFDITN 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,145,935
Number of Sequences: 27780
Number of extensions: 383418
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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