Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30546
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   3.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.4  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.4  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 97  SRSLDVPVVRSTTHLVDQDTTE 162
           +R+ D P++  T+HL   D  E
Sbjct: 427 ARNSDTPIILWTSHLTQADVIE 448


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 75  VLPKVMQVKKFGRSG 119
           VLPKV ++ +FG  G
Sbjct: 263 VLPKVQELARFGAYG 277


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 46  LRWMIILTRQFYQR 87
           +RW++I  RQ Y R
Sbjct: 294 VRWVMIALRQMYDR 307


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +1

Query: 109 DVPVVRSTTHLVDQDTTEFDSAWSNETS 192
           DVP + +   +++  T +F  +W+  T+
Sbjct: 185 DVPAMSNVLDVINVMTYDFHGSWAGVTA 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,086
Number of Sequences: 336
Number of extensions: 3985
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)