Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30546
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.03 |||microfibrillar-associated protein family protein|...    31   0.19 
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   5.3  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    25   9.3  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    25   9.3  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.3  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   9.3  

>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +3

Query: 12  EEDVFKQDFSGPTLDDHFDKTVLPKVMQVK--KFGRSGRTKY 131
           E+ V K+D+S  T  +  +K +LPK MQ++   F ++G+T++
Sbjct: 269 EDIVSKRDYSEATEGEVLNKDLLPKPMQIRGDLFAKAGQTRW 310


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 743 GHFVDVTTTESNNRKQIFWHSHLCKLQRKSFPKCDAPLPIS 621
           G F D  T+ +    Q+FW       QRK FP  +  L  S
Sbjct: 423 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYS 463


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 224 IPPRKLVSLAAEVSLLQAESNSVV 153
           +PP K+  +   VSLL++E NS++
Sbjct: 307 LPPTKMKDIDYFVSLLESEQNSLI 330


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 737 FVDVTTTESNNRKQIFWHSHLCKLQRKSFPK 645
           F D+T  ES+  +++ W  ++ ++Q + FP+
Sbjct: 6   FFDLTNFESDASEELGWLKYVGRVQTRVFPQ 36


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -2

Query: 294 PLTSLTGVKHCASFRRRFLEYLFHSPAEVSQSG 196
           P  +LTG K  AS    FL  LFH  A  S SG
Sbjct: 264 PTIALTGSKFLASCSCFFLSALFHDFAYWSISG 296


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 80  TKGYASQEVWTFRSY-EVQHIWSIKTLRSSIPLGAMKPQQPD 202
           T+ Y    +WTFR Y E+QH +  +   S         Q PD
Sbjct: 454 TRRYTPLALWTFREYNELQHFFDERINDSYAAASHYVSQFPD 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,546
Number of Sequences: 5004
Number of extensions: 69931
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)