Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30546
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0445 - 10351483-10351606,10351987-10353170                       62   6e-10
02_02_0526 + 11185825-11186832,11187795-11187869                       39   0.005
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736...    30   1.8  
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453...    29   5.5  

>02_02_0445 - 10351483-10351606,10351987-10353170
          Length = 435

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 25/40 (62%), Positives = 34/40 (85%)
 Frame = +3

Query: 12  EEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKY 131
           ++D++ +DFS PT +D  DK++LPKVMQVK FGRSGRTK+
Sbjct: 342 KDDIYARDFSAPTGEDKMDKSILPKVMQVKHFGRSGRTKW 381



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 133 THLVDQDTTEFDSAW-SNETSAARLTNFRGGMKQVFEKPSAKGS 261
           THLV++DTT++++ W +N    A+      GM     KP  KGS
Sbjct: 382 THLVNEDTTDWNAPWATNGPLRAKYNAKMAGMNAPIAKP--KGS 423


>02_02_0526 + 11185825-11186832,11187795-11187869
          Length = 360

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +3

Query: 18  DVFKQDFSGPTLDDHFDKTVLPKVMQVK 101
           +++++DFSGPT  D  D +VLPKVMQV+
Sbjct: 311 EIYRRDFSGPTGLDKMDVSVLPKVMQVE 338


>08_02_1458 -
           27270834-27271320,27271752-27271961,27272627-27273624,
           27274099-27274195,27274278-27274393,27274465-27274590,
           27275123-27275233,27275347-27275428,27275844-27275989,
           27276457-27276650,27277277-27277388,27277869-27278001,
           27278295-27278437,27278488-27278562,27278830-27278937,
           27279072-27279197,27279752-27279836,27280358-27280440,
           27280545-27280625,27280709-27280789,27281960-27282034,
           27282112-27282498,27282902-27283036
          Length = 1396

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 51  LDDHFDKTVLPKVMQVKKFGRSGRTK 128
           L +++   VLPKV++ K+  +SGRTK
Sbjct: 416 LHENYQLYVLPKVLESKRMAKSGRTK 441


>02_04_0005 -
           18843061-18843201,18843309-18843440,18844457-18845315,
           18845884-18845973,18846748-18846869,18846950-18847049,
           18847151-18847205,18847275-18847365,18847453-18847572,
           18847681-18847780,18847890-18848018,18848099-18848201,
           18848670-18848743,18848848-18848933,18849297-18849358,
           18849454-18849541,18849937-18850029
          Length = 814

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 59  SF*QDSFTKGYASQEVWTFRSYEVQHIWSIKTLRSSIP 172
           +F  D+   G  S + W F S  + + WS + +RSS+P
Sbjct: 408 NFFHDTARNGTVSIDRWPFFSCRLMNPWSWRGVRSSVP 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,639,342
Number of Sequences: 37544
Number of extensions: 413693
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)