Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30546
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)                     74   1e-13
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)                      29   4.2  
SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)                    28   9.8  
SB_33228| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)
          Length = 808

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 30/42 (71%), Positives = 39/42 (92%)
 Frame = +3

Query: 6   DKEEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKY 131
           D+E+ V+K++F+ PTL+DHFDKT++PKVMQVK FGRSGRTKY
Sbjct: 433 DEEDTVYKRNFAQPTLEDHFDKTIVPKVMQVKNFGRSGRTKY 474


>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 9    KEEDVFKQDFS--GPTLDDHFDKTVLPKVMQVKKFGRSGRTK 128
            K+ED+F QDF+       D F    LP++++ + FGR G +K
Sbjct: 1240 KKEDIF-QDFTQTSAVFVDPFSLEELPRMVEGRTFGRFGSSK 1280


>SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)
          Length = 1384

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 9   KEEDVFKQDFS--GPTLDDHFDKTVLPKVMQVKKFGRSGRTK 128
           K+ED+F QDF+       D F    LP++++ + FGR G +K
Sbjct: 589 KKEDIF-QDFTQTSAVFVDPFSLEELPRMVEGRTFGRFGSSK 629


>SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)
          Length = 1128

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 154 CLDRPNVLYFVRPER--PNFLTCITFGKTVLSK*SSSVG 44
           C+  P V+  +   +  P  + C+T GKT+LSK ++  G
Sbjct: 713 CITSPAVIITIETNKTPPPDMICVTEGKTLLSKLTNKTG 751


>SB_33228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 230 KYSRNLRRKEAQCLTPVKLVKGTLTLSSV-RRFNTVALD 343
           + +  +R++ + C  PV+++ GT+  SSV RR+ TV  D
Sbjct: 9   RVTERVRKRSSVCTQPVQVI-GTIMRSSVSRRYKTVRRD 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,618,017
Number of Sequences: 59808
Number of extensions: 510002
Number of successful extensions: 1187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)