Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30546
         (784 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04209-1|AAA92786.1|  439|Homo sapiens associated microfibrillar...    79   1e-14
BC050742-1|AAH50742.1|  439|Homo sapiens microfibrillar-associat...    79   1e-14
BC023557-1|AAH23557.1|  439|Homo sapiens microfibrillar-associat...    79   1e-14

>U04209-1|AAA92786.1|  439|Homo sapiens associated microfibrillar
           protein protein.
          Length = 439

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 32/43 (74%), Positives = 41/43 (95%)
 Frame = +3

Query: 3   LDKEEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKY 131
           +D++E+V+K+DFS PTL+DHF+KT+LPKVMQVK FGRSGRTKY
Sbjct: 349 MDEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKY 391



 Score = 50.0 bits (114), Expect = 9e-06
 Identities = 26/44 (59%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
 Frame = +1

Query: 133 THLVDQDTTEFDSAWSNETSAARLTNFR---GGMKQVFEKPSAK 255
           THLVDQDTT FDSAW  E SA     F+    G++ VFE+PSAK
Sbjct: 392 THLVDQDTTSFDSAWGQE-SAQNTKFFKQKAAGVRDVFERPSAK 434


>BC050742-1|AAH50742.1|  439|Homo sapiens microfibrillar-associated
           protein 1 protein.
          Length = 439

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 32/43 (74%), Positives = 41/43 (95%)
 Frame = +3

Query: 3   LDKEEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKY 131
           +D++E+V+K+DFS PTL+DHF+KT+LPKVMQVK FGRSGRTKY
Sbjct: 349 MDEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKY 391



 Score = 50.0 bits (114), Expect = 9e-06
 Identities = 26/44 (59%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
 Frame = +1

Query: 133 THLVDQDTTEFDSAWSNETSAARLTNFR---GGMKQVFEKPSAK 255
           THLVDQDTT FDSAW  E SA     F+    G++ VFE+PSAK
Sbjct: 392 THLVDQDTTSFDSAWGQE-SAQNTKFFKQKAAGVRDVFERPSAK 434


>BC023557-1|AAH23557.1|  439|Homo sapiens microfibrillar-associated
           protein 1 protein.
          Length = 439

 Score = 79.4 bits (187), Expect = 1e-14
 Identities = 32/43 (74%), Positives = 41/43 (95%)
 Frame = +3

Query: 3   LDKEEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKY 131
           +D++E+V+K+DFS PTL+DHF+KT+LPKVMQVK FGRSGRTKY
Sbjct: 349 MDEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKY 391



 Score = 50.0 bits (114), Expect = 9e-06
 Identities = 26/44 (59%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
 Frame = +1

Query: 133 THLVDQDTTEFDSAWSNETSAARLTNFR---GGMKQVFEKPSAK 255
           THLVDQDTT FDSAW  E SA     F+    G++ VFE+PSAK
Sbjct: 392 THLVDQDTTSFDSAWGQE-SAQNTKFFKQKAAGVRDVFERPSAK 434


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,296,152
Number of Sequences: 237096
Number of extensions: 2358511
Number of successful extensions: 3496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3493
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)