Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30546
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical pr...    64   8e-11
AL033536-2|CAA22139.1|  319|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical
           protein F43G9.10 protein.
          Length = 466

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 27/43 (62%), Positives = 36/43 (83%)
 Frame = +3

Query: 3   LDKEEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKY 131
           LD+E++V K++F+  T DD FDKT+LPKVMQVK FG++ RTKY
Sbjct: 377 LDEEDEVLKRNFAEATNDDQFDKTILPKVMQVKNFGKASRTKY 419



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 133 THLVDQDTTEFDSAW--SNETSAARLTNFRGGMKQVFEKPSAK 255
           THL ++DTT+    W  +N+ ++   T   GG + VFE+P+ K
Sbjct: 420 THLTEEDTTDHQGVWASTNQLNSQFSTKRAGGSRPVFERPATK 462


>AL033536-2|CAA22139.1|  319|Caenorhabditis elegans Hypothetical
           protein Y53C10A.5 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   LDKEEDVFKQDFSGPTLDDHFDKTVLPKVMQ 95
           L KEE+ FK     PTLD+  D   LP +++
Sbjct: 25  LKKEEERFKSPDPAPTLDEEVDIDTLPSMLE 55


>Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical
           protein C54G4.7 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 9   KEEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYNTFGRSRH 155
           K+   +++D     L   + K + PK+  VKK+ ++G T Y  F  S H
Sbjct: 40  KQMAKYRRDVMSKRLVMDYVKELNPKIDIVKKYSKNGVTSYEGFFASPH 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,457,385
Number of Sequences: 27780
Number of extensions: 388463
Number of successful extensions: 849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)