Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30546
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.79 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.79 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.4  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 106 LDVPVVRSTTHLVDQDTTEFDSAWSNETSAARLTNFRGGM 225
           L +P V+  +  +D+  T FD   +   +A  + NF+GGM
Sbjct: 446 LQMPGVKFESVNIDKLYTYFDKCDTLINNAVAVENFKGGM 485


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 106 LDVPVVRSTTHLVDQDTTEFDSAWSNETSAARLTNFRGGM 225
           L +P V+  +  +D+  T FD   +   +A  + NF+GGM
Sbjct: 446 LQMPGVKFESVNIDKLYTYFDKCDTLINNAVAVENFKGGM 485


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 202 LTNFRGGMKQVFEKPSAKGSTMFD 273
           + NF+G +  V  +PS K    FD
Sbjct: 108 IENFKGTVTHVESRPSKKEGLQFD 131


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 186 NLSSQTD*LPRGNETSIRETFG 251
           N+S   D L RG + S+R  FG
Sbjct: 5   NISELLDNLLRGYDNSVRPDFG 26


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = -1

Query: 454  WSYQKNVFTKRVHHRNHVINNDDSL 380
            W Y  NV      HR  V   DD +
Sbjct: 1677 WGYHHNVNKHCTIHRTQVKETDDKI 1701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,044
Number of Sequences: 438
Number of extensions: 5073
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)