Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30545
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    30   0.32 
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   2.3  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    25   9.2  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 330  IIGKVQRVFSLPTFRINCSLIRVDKNKTNVTSYILKFIVKIHIREDCVPNL 178
            II  V R    P F  NC+   ++  +T V   I K++  +  R D  P L
Sbjct: 939  IIDYVNRALDDPKFLTNCNRDFIETIRTFVIENIAKYLASVRERRDLAPML 989


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -2

Query: 303 SLPTFRINCSLIRVDKNKTNVTSYILKFIVKIHIREDCVPNLFIFKSISHFVVLELIGLQ 124
           ++P + +  SL++V  N  NVT+YIL F     +  D   +  +F + S  +++  I + 
Sbjct: 138 TIPPWDVCESLLKVYANTFNVTNYILDFEQADKLLSDLKNSNHVF-ATSIILIVTAIAVA 196

Query: 123 LRLIRF 106
           L L  F
Sbjct: 197 LSLESF 202


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 756 YLIGEKYVGYPFIGSQKF 703
           Y   +KYV YPF+G+  F
Sbjct: 108 YFPPKKYVHYPFVGNSNF 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,853
Number of Sequences: 5004
Number of extensions: 56103
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)