Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30543
         (586 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      24   1.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.3  

>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 133 QHLVGETVFGVAHIFASFNDTFVHVTDLSGRETI 234
           +H+VG  V  V  ++ SFN T  +V D   RE I
Sbjct: 21  EHMVGTIVVVVRGVWVSFNQTAQNV-DTFVREQI 53


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 191 SLNEAKMCATPNTVSPTK 138
           ++NE + C+TP   SPTK
Sbjct: 427 NVNENQDCSTPTENSPTK 444


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 332 NSWHNGLAHKAPCYWWKQN 388
           N WHN   + +  +W K N
Sbjct: 374 NRWHNNNGNNSNNHWRKNN 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,734
Number of Sequences: 336
Number of extensions: 3097
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)