Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30543
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   107   1e-24
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   107   1e-24
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    29   0.66 
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   3.5  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   8.1  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  107 bits (257), Expect = 1e-24
 Identities = 53/85 (62%), Positives = 59/85 (69%)
 Frame = +3

Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
           KVK DRDE+SPYAAMLAAQD A KCK +GITALHIK+RA            AQ       
Sbjct: 49  KVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALA 108

Query: 435 XXXMKIGRIEDVTPVPSDSTRRKGG 509
              M+IGRIEDVTP+P+DSTRRKGG
Sbjct: 109 RAGMRIGRIEDVTPIPTDSTRRKGG 133



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 34/45 (75%), Positives = 40/45 (88%)
 Frame = +1

Query: 124 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGIR 258
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGG++
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMK 49


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  107 bits (257), Expect = 1e-24
 Identities = 53/85 (62%), Positives = 59/85 (69%)
 Frame = +3

Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
           KVK DRDE+SPYAAMLAAQD A KCK +GITALHIK+RA            AQ       
Sbjct: 49  KVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALA 108

Query: 435 XXXMKIGRIEDVTPVPSDSTRRKGG 509
              M+IGRIEDVTP+P+DSTRRKGG
Sbjct: 109 RAGMRIGRIEDVTPIPTDSTRRKGG 133



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 34/45 (75%), Positives = 40/45 (88%)
 Frame = +1

Query: 124 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGIR 258
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGG++
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMK 49


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 272 TVSLHLMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVSPTKC 135
           T S HL     R I+S P K      V +NE K   +   +S   C
Sbjct: 107 TASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASC 152


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 134 WGPRVTWTSSLATLFFL 84
           +GPR+ WTSS ++L F+
Sbjct: 304 FGPRIFWTSSQSSLMFV 320


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 437 TSKSPKCRLSTRTRGLCFVSTSSTE----LYVQGRYAKSFAFLCYILCR 303
           +SK     L++R   +   S+SSTE    L+  GR++ + + L Y LC+
Sbjct: 23  SSKDAATSLASRVLTIAKGSSSSTEFSNALHTFGRFSDNDSVLIYDLCK 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,477
Number of Sequences: 5004
Number of extensions: 47041
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)