Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30543
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 113 1e-25
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 100 7e-22
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 88 4e-18
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 42 3e-04
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 1.6
04_03_0963 + 21285160-21285579,21286585-21286635,21287017-212875... 28 4.8
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 6.3
09_04_0520 + 18286435-18287279,18287818-18288697 27 8.3
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 8.3
08_02_1092 + 24267737-24268641,24269005-24269884 27 8.3
05_03_0656 - 16676406-16676654 27 8.3
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 27 8.3
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 27 8.3
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 113 bits (271), Expect = 1e-25
Identities = 57/85 (67%), Positives = 62/85 (72%)
Frame = +3
Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 83 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 142
Query: 435 XXXMKIGRIEDVTPVPSDSTRRKGG 509
MKIGRIEDVTPVP+DSTRRKGG
Sbjct: 143 RSGMKIGRIEDVTPVPTDSTRRKGG 167
Score = 85.0 bits (201), Expect = 4e-17
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = +1
Query: 85 RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGIR 258
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGG++
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 83
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 100 bits (240), Expect = 7e-22
Identities = 57/96 (59%), Positives = 62/96 (64%), Gaps = 11/96 (11%)
Frame = +3
Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
Query: 435 XXXMKIGRI-----------EDVTPVPSDSTRRKGG 509
MKIGRI EDVTPVP+DSTRRKGG
Sbjct: 121 RSGMKIGRIADDVLSIFCHTEDVTPVPTDSTRRKGG 156
Score = 85.8 bits (203), Expect = 2e-17
Identities = 40/61 (65%), Positives = 47/61 (77%)
Frame = +1
Query: 76 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGI 255
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGG+
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 256 R 258
+
Sbjct: 61 K 61
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 88.2 bits (209), Expect = 4e-18
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +1
Query: 76 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGI 255
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGG+
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 256 R 258
+
Sbjct: 60 K 60
Score = 80.6 bits (190), Expect = 8e-16
Identities = 42/69 (60%), Positives = 46/69 (66%)
Frame = +3
Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 119
Query: 435 XXXMKIGRI 461
MKIGRI
Sbjct: 120 RSGMKIGRI 128
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +3
Query: 462 EDVTPVPSDSTRRKGG 509
EDVTPVP+DSTRRKGG
Sbjct: 178 EDVTPVPTDSTRRKGG 193
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KVKADRDEASPYAAMLAAQDVAEKCK 332
K+KAD DE+SPYAAML +QDVA CK
Sbjct: 216 KIKADCDESSPYAAMLVSQDVALCCK 241
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 347 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 457
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>04_03_0963 +
21285160-21285579,21286585-21286635,21287017-21287502,
21287866-21287961
Length = 350
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 329 AFLCYILCRQHSSVG*RFITVSLHLMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTV 150
AF+ L RQ +S + H + VT I + DKS+ +V LNEA + +T
Sbjct: 273 AFINMCLPRQRASFTTVAFVLEKHQIDVVTSTISADHDKSLFSVHVRLNEASLQSTEGLT 332
Query: 149 SPTK 138
K
Sbjct: 333 PEAK 336
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 360 LCARPLCQEFCISLLHPV 307
LC R LC+EFC+ + P+
Sbjct: 51 LCTRDLCEEFCLLRISPL 68
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 170 CATPNTVSPTKCWGPR 123
C P+ V+PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 332 NSWHNGLAHKAPCYWWKQNKDPWSWC 409
+ W GL +P Y + N D + WC
Sbjct: 305 DGWQEGLITFSPTYKYHPNSDQYYWC 330
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 170 CATPNTVSPTKCWGPR 123
C P+ V+PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 302 GGTGCSREMQNSWHNGLAHKAPCYWWKQNKD 394
GG G + + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 94 CFFSGPWLSL*LESCQNLKEIWLKD 20
C +G WLSL L+ Q L+E+ L+D
Sbjct: 1241 CGITGKWLSLMLQHVQALQELSLED 1265
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 556 TLKLNLKGRLQPASSSPPFLRVESDGTGVTSSMR 455
+L L RLQP + PP L E++ V +S R
Sbjct: 229 SLPLERSSRLQPVVAQPPVLPAETEWDNVITSSR 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,466
Number of Sequences: 37544
Number of extensions: 351724
Number of successful extensions: 916
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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