Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30543
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)               81   7e-16
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)                   33   0.23 
SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.91 
SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)               29   2.1  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)                      27   8.5  
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 43/69 (62%), Positives = 45/69 (65%)
 Frame = +3

Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
           KVKADRDEASPYAAMLAAQDVA +CK +GITALHIKLRA            AQ       
Sbjct: 232 KVKADRDEASPYAAMLAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALA 291

Query: 435 XXXMKIGRI 461
              MKIGRI
Sbjct: 292 RSGMKIGRI 300



 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 37/46 (80%), Positives = 42/46 (91%), Gaps = 1/46 (2%)
 Frame = +1

Query: 124 LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGIR 258
           LG +H+  GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGG++
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMK 232


>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
          Length = 1134

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 216  IRPGNYRPCHWWHKVKADRDEASPYAAMLAAQDVAEKCKTLG--ITALHIKLR 368
            I PG+Y P   WHK  A R+EA     M A++  AE  K L   +   H++++
Sbjct: 923  ILPGHYLPHPTWHKTLALREEALRNRHMQASERWAEHTKRLPPLVVGNHVRIQ 975


>SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 231 YRPCHWWHKVKADRDEASPYAAMLA 305
           +RPCH  HK K   DEA  YA + A
Sbjct: 363 FRPCHNVHKTKHFNDEALAYACLTA 387


>SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)
          Length = 141

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 252 HKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 359
           H V A  DEA+    +   QD+  KCK LG+T + I
Sbjct: 73  HPVIAMLDEATSALDVRTEQDLYRKCKQLGMTLISI 108


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 459  IEDVTPVPS-DSTRRKGGEEDAGCNLP 536
            ++DV  +P  DS  RKGG+E    NLP
Sbjct: 2646 MDDVASLPQGDSVERKGGDETKDVNLP 2672


>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
          Length = 230

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 163 VAHIFASFNDTFVHVTDLSGRETIARVTGGIR 258
           + +I  +FND    + DLSG+ETI  ++  IR
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLISCKIR 185


>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 94  KVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGIR*RLTV 273
           K +K+ + V     HLVG  +F    IFA  +  F  +    G     R+  G   RL V
Sbjct: 624 KQSKQRLSVKAKQCHLVGMDLFSHQDIFARLHQKFSWILKACGNRITERLLEGPPKRLQV 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,524,508
Number of Sequences: 59808
Number of extensions: 399113
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)