Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30543
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   111   5e-25
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    27   9.8  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  111 bits (266), Expect = 5e-25
 Identities = 56/85 (65%), Positives = 60/85 (70%)
 Frame = +3

Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
           KVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA            AQ       
Sbjct: 62  KVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALA 121

Query: 435 XXXMKIGRIEDVTPVPSDSTRRKGG 509
              MKIGRIEDVTP+PSD TRRKGG
Sbjct: 122 RAGMKIGRIEDVTPIPSDCTRRKGG 146



 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
 Frame = +1

Query: 76  MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 252
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 253 IR 258
           ++
Sbjct: 61  MK 62


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 314 CSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSC-SFKYED 451
           C+R+    W N +A      WWK+N +  S     T   C SF + D
Sbjct: 492 CTRDKIFEWMNNVATDFRSEWWKKNNNLHSPNPSGTGQRCLSFAFGD 538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,479,316
Number of Sequences: 27780
Number of extensions: 290616
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)