Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30543
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    27   0.18 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.18 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.1  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   6.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   6.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 272 TVSLHLMPPVTRAIVSR 222
           +VSLHL+ PVTR +V R
Sbjct: 258 SVSLHLISPVTRGLVRR 274


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 272 TVSLHLMPPVTRAIVSR 222
           +VSLHL+ PVTR +V R
Sbjct: 258 SVSLHLISPVTRGLVRR 274


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 428 SCSFKYEDWPH 460
           SC+ K+E +PH
Sbjct: 131 SCAMKFESYPH 141


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 486 DSTRRKGGEEDAGCNLPFRLSFNVDFQ 566
           +S+   GG EDA   L  RL+ N   Q
Sbjct: 254 ESSTSSGGNEDANLLLKARLNPNSSLQ 280


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 151 TVFGVAHIFASFNDTFVHVTDLSGRETI 234
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 19  DLLAKFLLDFDSSQAKG*AMAPRKNKVAKEEVQV 120
           DL+   L   ++S A G  M     KVAKE++QV
Sbjct: 222 DLVICKLSHSNASVAGGMEMILLCEKVAKEDIQV 255


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 19  DLLAKFLLDFDSSQAKG*AMAPRKNKVAKEEVQV 120
           DL+   L   ++S A G  M     KVAKE++QV
Sbjct: 222 DLVICKLSHSNASVAGGMEMILLCEKVAKEDIQV 255


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 151 TVFGVAHIFASFNDTFVHVTDLSGRETI 234
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -1

Query: 556 TLKLNLKGRLQPASSSPPFLRVESDGTGVTSS 461
           T+   L   +QP   SPP  +  S     T S
Sbjct: 262 TVNRQLNSDVQPGHGSPPVKQHRSSSASTTCS 293



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 284 TLRCYVGGTGCSREMQ 331
           T+RC+ GG   S E Q
Sbjct: 296 TVRCFTGGPRKSHESQ 311


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 452 NLHT*TSKSPKCRLSTR 402
           N+HT  SK P C +  R
Sbjct: 24  NVHTRPSKEPICNICKR 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,839
Number of Sequences: 438
Number of extensions: 3411
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)